Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g05
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    28   0.22 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   3.6  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    24   4.7  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    24   4.7  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    24   4.7  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    23   8.3  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    23   8.3  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 259 KMKLLIFFGVLAFVAIELIHSKPVAEETKKDETTPPVTVTEGAAR 125
           K+ L    GV+  +A   +++KP ++ +    T  P+T  + AA+
Sbjct: 303 KISLTFLIGVMLVIAATFLYTKPESKPSPSRGTYIPMTTQDAAAK 347


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 211 ELIHSKPVAEETKKDETTPPVTVT 140
           EL     VAE++K+ + T P TVT
Sbjct: 495 ELYRQSAVAEKSKRVKDTSPYTVT 518


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 86  YERVSNGCHGE 54
           Y+RVSN CHG+
Sbjct: 635 YQRVSNMCHGK 645


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 207 SSIATKARTPKKINSFIFKYFRDR 278
           SSI TK R P K++S+    F ++
Sbjct: 182 SSILTKPRNPSKLDSYTHLSFYEK 205


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 222 KARTPKKINSFIFKYFRDRF 281
           K R+ KK+ + I  YF D F
Sbjct: 131 KVRSAKKVGNVILYYFEDAF 150


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 229 EHRKKSTVSFLSTFE 273
           EH  KS VSF+S F+
Sbjct: 847 EHTSKSWVSFISVFD 861


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 192 GLEWISSIATKA 227
           G EW+S+I TKA
Sbjct: 898 GTEWVSAITTKA 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 838,524
Number of Sequences: 5004
Number of extensions: 11273
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)