Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g05
         (281 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   5.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   6.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    19   8.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 268 KYLKMKLLIFFGVLAF 221
           K +K+ LLIF+G + F
Sbjct: 17  KKVKIVLLIFYGSIMF 32


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 278 SVSKVLKNETVDFF 237
           SVS+VL + T+DF+
Sbjct: 49  SVSEVLMDFTLDFY 62


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 134  GRKSCRSSIR*SYFSEYERVSNGCHGE 54
            G K+C       + + Y  +SN C G+
Sbjct: 1611 GPKNCLFRKPEHFVASYALISNQCEGD 1637


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 56 EGRRCQICS*IILSRN 9
          E  RC IC  +  SRN
Sbjct: 34 EEYRCVICERVYCSRN 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,681
Number of Sequences: 438
Number of extensions: 679
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)