Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g04
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255...    30   1.8  
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    30   2.4  
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031...    29   4.1  

>06_01_0356 +
           2557127-2557193,2557272-2557315,2557433-2557528,
           2559259-2559351,2559450-2559540,2559617-2559678,
           2559754-2559938,2560022-2560199,2560293-2560336,
           2560440-2560635,2560728-2560745,2560955-2561005
          Length = 374

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 777 ASDVQALXTADFEIGHYIRERVVSRAVLLYTGEGL 673
           A ++Q     D++IG  IR++++  AV  +TGE +
Sbjct: 273 ADELQGQMEHDYDIGTTIRDKIIPHAVSWFTGEAV 307


>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +3

Query: 300 MCCTS--SDGCKVQTKLIVITFLFLAKIFWYIHYYCYHQSTKLLRNSFLKRENRKISTRI 473
           + CT   + G  +Q   +VI F F      Y+H  CY     L  N   K  N KI +R+
Sbjct: 438 LVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRICYTYGFCLFTN---KNFNTKIKSRV 494

Query: 474 IVV*SSGKLEL 506
               S G L L
Sbjct: 495 ASCMSDGDLPL 505


>05_06_0234 -
           26602660-26602728,26602814-26602988,26603077-26603120,
           26603204-26603381,26603468-26603652,26603737-26603801,
           26603985-26604066,26604342-26604434,26605096-26605191,
           26605312-26605355,26605467-26605530
          Length = 364

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 777 ASDVQALXTADFEIGHYIRERVVSRAVLLYTGE 679
           A  +Q     D++IG  IR++++  AV  +TGE
Sbjct: 270 AEQLQNQMEQDYDIGSTIRDKIIPHAVSWFTGE 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,831,747
Number of Sequences: 37544
Number of extensions: 286341
Number of successful extensions: 659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)