Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11g04
(777 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M86667-1|AAC37544.1| 391|Homo sapiens NAP protein. 52 2e-06
BT007023-1|AAP35669.1| 391|Homo sapiens nucleosome assembly pro... 52 2e-06
BC002387-1|AAH02387.1| 391|Homo sapiens nucleosome assembly pro... 52 2e-06
U77456-1|AAC50870.1| 375|Homo sapiens nucleosome assembly prote... 44 6e-04
BC022090-1|AAH22090.1| 375|Homo sapiens nucleosome assembly pro... 44 6e-04
D50370-1|BAA08904.1| 506|Homo sapiens nucleosome assembly prote... 30 8.1
BC034954-1|AAH34954.1| 506|Homo sapiens nucleosome assembly pro... 30 8.1
AL009173-1|CAA15661.1| 506|Homo sapiens nucleosome assembly pro... 30 8.1
AK223621-1|BAD97341.1| 506|Homo sapiens nucleosome assembly pro... 30 8.1
>M86667-1|AAC37544.1| 391|Homo sapiens NAP protein.
Length = 391
Score = 52.4 bits (120), Expect = 2e-06
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = -1
Query: 771 DVQALXTADFEIGHYIRERVVSRAVLLYTGEGLXXXXXXXXXXXXXXXXXXXXXXXXEPA 592
D +A+ ADFEIGH++RER++ R+VL +TGE + E
Sbjct: 315 DAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEEND 374
Query: 591 PRRRTKKPGKGPAENPAECKQQ 526
P KK +NPAECKQQ
Sbjct: 375 PDYDPKKD-----QNPAECKQQ 391
>BT007023-1|AAP35669.1| 391|Homo sapiens nucleosome assembly
protein 1-like 2 protein.
Length = 391
Score = 52.4 bits (120), Expect = 2e-06
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = -1
Query: 771 DVQALXTADFEIGHYIRERVVSRAVLLYTGEGLXXXXXXXXXXXXXXXXXXXXXXXXEPA 592
D +A+ ADFEIGH++RER++ R+VL +TGE + E
Sbjct: 315 DAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEEND 374
Query: 591 PRRRTKKPGKGPAENPAECKQQ 526
P KK +NPAECKQQ
Sbjct: 375 PDYDPKKD-----QNPAECKQQ 391
>BC002387-1|AAH02387.1| 391|Homo sapiens nucleosome assembly
protein 1-like 1 protein.
Length = 391
Score = 52.4 bits (120), Expect = 2e-06
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = -1
Query: 771 DVQALXTADFEIGHYIRERVVSRAVLLYTGEGLXXXXXXXXXXXXXXXXXXXXXXXXEPA 592
D +A+ ADFEIGH++RER++ R+VL +TGE + E
Sbjct: 315 DAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEEND 374
Query: 591 PRRRTKKPGKGPAENPAECKQQ 526
P KK +NPAECKQQ
Sbjct: 375 PDYDPKKD-----QNPAECKQQ 391
>U77456-1|AAC50870.1| 375|Homo sapiens nucleosome assembly protein
2 protein.
Length = 375
Score = 44.0 bits (99), Expect = 6e-04
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = -1
Query: 771 DVQALXTADFEIGHYIRERVVSRAVLLYTGEGL 673
D + +DFEIGH+ RER+V RAVL +TGE +
Sbjct: 308 DSEFTLASDFEIGHFFRERIVPRAVLYFTGEAI 340
>BC022090-1|AAH22090.1| 375|Homo sapiens nucleosome assembly
protein 1-like 4 protein.
Length = 375
Score = 44.0 bits (99), Expect = 6e-04
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = -1
Query: 771 DVQALXTADFEIGHYIRERVVSRAVLLYTGEGL 673
D + +DFEIGH+ RER+V RAVL +TGE +
Sbjct: 308 DSEFTLASDFEIGHFFRERIVPRAVLYFTGEAI 340
>D50370-1|BAA08904.1| 506|Homo sapiens nucleosome assembly protein
protein.
Length = 506
Score = 30.3 bits (65), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 762 ALXTADFEIGHYIRERVVSRAVLLYTGE 679
A+ DFEIG + + V+ +++ YTGE
Sbjct: 460 AILDEDFEIGQILHDNVILKSIYYYTGE 487
>BC034954-1|AAH34954.1| 506|Homo sapiens nucleosome assembly
protein 1-like 3 protein.
Length = 506
Score = 30.3 bits (65), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 762 ALXTADFEIGHYIRERVVSRAVLLYTGE 679
A+ DFEIG + + V+ +++ YTGE
Sbjct: 460 AILDEDFEIGQILHDNVILKSIYYYTGE 487
>AL009173-1|CAA15661.1| 506|Homo sapiens nucleosome assembly
protein 1-like 3 protein.
Length = 506
Score = 30.3 bits (65), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 762 ALXTADFEIGHYIRERVVSRAVLLYTGE 679
A+ DFEIG + + V+ +++ YTGE
Sbjct: 460 AILDEDFEIGQILHDNVILKSIYYYTGE 487
>AK223621-1|BAD97341.1| 506|Homo sapiens nucleosome assembly
protein 1-like 3 variant protein.
Length = 506
Score = 30.3 bits (65), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 762 ALXTADFEIGHYIRERVVSRAVLLYTGE 679
A+ DFEIG + + V+ +++ YTGE
Sbjct: 460 AILDEDFEIGQILHDNVILKSIYYYTGE 487
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,216,485
Number of Sequences: 237096
Number of extensions: 1565427
Number of successful extensions: 3585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3585
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -