Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g01
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.33 
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   3.1  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   5.4  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   7.2  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   7.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 399  LKNYIPFIFFVFKIFLDVKSCLPIFYQMVLVNTNETARYLNN-KLKENNVQHQINYNPLL 575
            + N+ PF+       L+VK+ LPI   + +++ ++   +++N  + E    H IN + +L
Sbjct: 2027 ISNHYPFMHITISALLEVKNLLPIDLNIRIIDKDQEGVWMSNVGIGECAYVHSINISHVL 2086


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -2

Query: 780 DASLLFSXIILIFNTYTSKFLFSYFLTNFI 691
           D ++L S + LIF  + S ++FS FLT+F+
Sbjct: 349 DRTILGSCV-LIFTYFMSYYIFSNFLTSFL 377


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 640 DVFRLKNYSMKEFEERINKI 699
           +V RLKN   KE EE++N++
Sbjct: 393 EVNRLKNLKRKELEEKLNQV 412


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 435 KIFLDVKSCLPIFYQMVLVNTNETARYLNNKLKENNVQHQIN 560
           +I L V    P       +     A+Y N K+K +N+   +N
Sbjct: 423 EIVLQVLESFPAAVSFSTITNTIQAKYSNRKIKNSNITRSLN 464


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 486 LVNTNETARYLNNKLKENNVQHQINYNPLLQIYF 587
           L +   + RYL + LK+NN Q  I+ NPLL   F
Sbjct: 792 LEDIQNSHRYLCS-LKKNNSQKDIHRNPLLSHVF 824


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 771 LLFSXIILIFNTYTSKFLFSYFLTN-FIYPF--FKFLH*IVF 655
           LLF   +L F +++  F F +FL+  FI  F  F  LH + F
Sbjct: 117 LLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFF 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,802
Number of Sequences: 5004
Number of extensions: 54117
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)