Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f24
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 32 0.10
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 31 0.24
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 30 0.32
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 29 0.73
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu... 29 0.97
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 29 0.97
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 1.7
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 27 3.0
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 3.0
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 3.9
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.9
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 26 5.2
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 5.2
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 26 6.8
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.0
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 9.0
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 9.0
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 25 9.0
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 25 9.0
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 31.9 bits (69), Expect = 0.10
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -2
Query: 579 NIEVATKINDSNKKIVKPTTNYYDNNFVLEDYL-----SYKTVFKSDNRKPKLHEKNRLK 415
N + ++ + D NKK +KP D F L+ YL S ++ F+ +P N+
Sbjct: 42 NSDTSSILFDKNKKPLKPKIIIPDKEFDLDYYLKDETESIQSPFEGFTAQPNFSNFNKQG 101
Query: 414 STPQSTSNYSRFNKSTKK 361
+T +N+ R N+ ++
Sbjct: 102 NTMNREANFQRTNEKIQR 119
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 30.7 bits (66), Expect = 0.24
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Frame = -2
Query: 489 DYLSYKTVFKSDNRKPKLHEKNRLKSTPQSTSNYSRFNKSTKKRMKSDFIDILKRELTNS 310
DY+ K+ +KP +K K + +S +KS + +L+ + T+S
Sbjct: 2 DYVGGSLKLKNVKKKPLKKKKKDSKKLAEKVQEHSSRDKSPLEENGVSTYQMLRSKDTDS 61
Query: 309 SLGSVEPQNFYQSLKFIAKTKKA-NAKLK-YADEMRDKN 199
++ E Q ++S++ +KA N +LK + D + + N
Sbjct: 62 AMPMTEAQKHFESVQEQRLLQKAKNERLKTHKDRIDEYN 100
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 30.3 bits (65), Expect = 0.32
Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Frame = -2
Query: 630 NLGFEIEESVAKKL--VDNNIEVATKINDSNKKIVKPTTNYYDNNFVLEDYLSYKTVFKS 457
N G ++ + +K+ ++ ++E ATK + K +K + D S K+V
Sbjct: 872 NFGNKLAKEHTEKISSLEKDLEAATKTASTLSKELKTVKSEND---------SLKSVSND 922
Query: 456 DNRKPKLHEKNRLKSTPQSTSNYSRFNKSTKKRMKSDFIDILKRELTNSSLGSVEPQNFY 277
D K K + K Q+ + + + + ++ +DI+ + + ++ S++ +
Sbjct: 923 DQNKEKSVNNEKFKEVSQALAEANEKLNARDEEIERLKVDIIGLQNASLNMQSLKDSDNR 982
Query: 276 QSLKFIAKTKKANAKLKYADE 214
+K K+ KLK ADE
Sbjct: 983 TISDLESKNKELEKKLKEADE 1003
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 29.1 bits (62), Expect = 0.73
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 630 NLGFEIEESVAKKLVDNNIEVATKINDSNKKIVK 529
NLG ++ ++ ++DN IE + +I D K +K
Sbjct: 246 NLGASVDLNILSHVIDNQIEYSMEITDKTKADIK 279
>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 28.7 bits (61), Expect = 0.97
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = -2
Query: 561 KINDSNKKIVKPTTNYYDNNFVLEDYLSYKTVFKSDNRKPKLHEKNRLKSTPQSTSNYSR 382
KI +++ ++ T +++D+ F+ +D L VF+ D R K + + T Y
Sbjct: 88 KIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDER--AWVWKIEGEDGSEGTELYFD 145
Query: 381 FNKSTKKRMKS-DFIDILKRELTNSS 307
++ + +++S DF+DI + N++
Sbjct: 146 IDEEIRFQIESEDFVDISPKRNKNAT 171
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 28.7 bits (61), Expect = 0.97
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 594 KLVDNNIEVATKINDSN-KKIVKPTTNYYDNNFVLEDYLSYKTVFKSDNRKPKLHEKNRL 418
K + E + K+ +SN +K K ++Y+N D K + KS + KL E+N
Sbjct: 118 KRIQERDESSKKLRESNIEKARKAIDDFYENFNDKRD----KVIAKSRKEQEKLLEENES 173
Query: 417 KSTPQSTSNYSRFNK 373
KST T+++ R K
Sbjct: 174 KST--GTTSWERILK 186
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 110 ALSVFVLPTIFLLFFLDFAMIFRLLNTHSGFLSRISSAYFNFALAFLVLAMNF 268
AL+VF+ P LLFF + +I R N+ F R F F LA L++ F
Sbjct: 175 ALTVFINPNALLLFFPSY-LILRKCNSSIKF--RQIFVVFLFYLAGLIITSGF 224
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 542 LLESFIFVATSILLSTSFLATDSSISKPRLDSLNFNLFVSRL-SFMSQALKVVSKMS-TK 715
LL+ + + +++ S+ F+ +SISK RLD +F +S SF + ++S ++
Sbjct: 1296 LLKIYSTIDDNLIFSSVFVEEINSISKKRLDEPDFERRLSAFTSFNEKHFSLISDLAWLP 1355
Query: 716 KLYKIF 733
LY F
Sbjct: 1356 VLYNFF 1361
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -2
Query: 672 KESLETNKLKLSESNLGFEIEESVAKKLVDNNIEVATKINDSNKKIVKPTTNYYDNNFVL 493
K LETN+L + + N + + + + + VAT N ++++ T N+ + F
Sbjct: 280 KPVLETNRLLVGKGNGNIFVYDIIWSESTSKAVLVATITNAHDEQVCGLTWNHDGSQFAS 339
Query: 492 EDYLSYKTVFK-SDNRKP 442
+ +FK SD R+P
Sbjct: 340 GGNDNRVCLFKGSDLRQP 357
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 27.1 bits (57), Expect = 3.0
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Frame = -2
Query: 705 ILETTFSACDMKESLET--NKLKLSESNLGFEIEE---SVAKKLVDNNIEVATKINDSNK 541
+L+ + C KE +T N LS S + +I S K L + ++T
Sbjct: 1167 LLQKVINRCFSKEISQTISNYYFLSLSEMLIQINPNNLSKPKLLPLCLVNLSTNNLSVRL 1226
Query: 540 KIVKPTTNYYDNNFVLEDYLSYKTVFKSDNRKPKLHEKNRLKSTPQSTSNYS 385
K + N++ NNF + + +KT +S N P L+ K + + Q S+++
Sbjct: 1227 KAFELLGNFHLNNFTMTALMEFKTFLESSN--PALYLKPQYLFSVQLASDFT 1276
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 3.9
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 696 TTFSACDMKESLETNKLKLSESNLGFEIEESVAKKLVDNNI--EVATKINDSNKKIVKPT 523
TT+S + + N+ + S S + I ES +++V+NN+ ++ T N N K
Sbjct: 59 TTYSEINNIHDVPGNQDEWSSSPIAGIIVESEDEEVVENNLHSQMGTSCNKINSNSNKGK 118
Query: 522 TNYYDNNFVLED 487
N + FVL+D
Sbjct: 119 ENMH---FVLDD 127
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 273 SLKFIAKTKKANAKLKYADEMRDKNPECVFKRRKIIAKSRKNRRN 139
S++ K K A L+Y + ++PE + K RK+ A + RN
Sbjct: 47 SIEDAEKIKTYPAALRYIFALNSRHPEKLQKLRKMKAMQERQERN 91
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = -2
Query: 714 FVDILETTFSACDMKESLETNKLKLSESNLGFEIEESVAKKLVDNNIEVATKINDSNKKI 535
F ++L +SA ++ E T+ N E+ + +A L+D N E++ + +I
Sbjct: 765 FHNMLSFKYSANEIYEFCGTHSRAEVHKN---EVLKRMAYYLIDENKEISILRRILSLRI 821
Query: 534 VKPTTNY 514
V+PTT++
Sbjct: 822 VEPTTSF 828
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 5.2
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Frame = -2
Query: 660 ETNKLKLSESNLGFEIEESVAKKLVDNNIEVATKINDSNKKIVKPTTNYYD------NNF 499
E ++ K +NL FE + K + N E A + + PT+ Y D
Sbjct: 457 EADERKDGLNNLLFENKSGANTKEMSNGTETAKENCSPQQDSTSPTSGYQDLVKELAKEI 516
Query: 498 VLEDYLSYKTVFKSDNRK-PKLHEKNRLKSTPQSTSNYSRFNKSTKKRMKSD 346
+ L K N+ P H K R KS + T + + ++SD
Sbjct: 517 EMRKSLELKLKLSQSNKAGPVKHRKRRPKSKRRITGKVVFDSPNVASGVESD 568
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 521 VVGFTIFLLESFIFVATSILLSTSFL--ATDSSISKPRLDSLNFNLFVSRLSFM 676
+VG L+ + IFV+ +I S F+ + S+ +K + LN L+ S ++F+
Sbjct: 149 IVGLLYALISTCIFVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLLLYSSGVAFI 202
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 140 FLLFFLDFAMIFRLLNTHSGFLSRISSAYFN 232
FLLFFL F+ F L FLS+I YF+
Sbjct: 122 FLLFFLSFSFSFSFL----FFLSQIFIVYFS 148
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.4 bits (53), Expect = 9.0
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Frame = -2
Query: 678 DMKESLETNKLKLSESNLGFEI---EESVAKKLVDN-NIEVATKINDSNKKIVKPTTNYY 511
D K ETN+LKL N + +++ A K D N E+ N K +K +
Sbjct: 411 DFKAEKETNRLKLEGLNKQISLTKPKKAEATKRCDQLNREIDILQNHVEK--LKMSLKNT 468
Query: 510 DNNFVLEDYLSYKTVFKSDNRKPKLHEKNRLKS 412
+++ ED L K + +R L+E + LKS
Sbjct: 469 NSDITGEDVLQQKLKQLAKDRGNLLNELDALKS 501
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 9.0
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Frame = -2
Query: 567 ATKIND-SNKKIVKPTTNYYDNNFVLEDYLSYKTVFKSDNRKPKLHEKNRLKSTPQSTSN 391
A ++ND ++I DN FV +D +++ V D P + + K+ Q +
Sbjct: 224 AAELNDEQTREIEMYADEELDNIFVEDDIIAHLAV-AEDTAHPAANNHHSEKAGTQINNK 282
Query: 390 YSRFNKSTKKRMKSDFIDILKRELTNSSLGS----VEPQNFYQSLK 265
+ S K +S + + T+ S+G+ P+ + LK
Sbjct: 283 DKGSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTSPKTLFDPLK 328
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 9.0
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -2
Query: 474 KTVFKSD--NRKPKLHEKNRLKSTPQSTSNYSRFNKSTKKRMKSDFIDILKRELTNSSLG 301
K FK+ N K K R++ + Y F + K+ DF+D + N S+
Sbjct: 242 KNTFKATIVNAKTKSEPIYRIEGSWTGMLKYCTF-EDQKRSAWEDFLDCGNYKPVNISVA 300
Query: 300 SVEPQNFYQS 271
+E Q Y+S
Sbjct: 301 PIEEQGEYES 310
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 396 SNYSRFNK--STKKRMKSDFIDILKRELTNSSLGSVEPQNFYQSLKFIAKT 250
S Y NK ST + K F +I+++ LTN + + NF Q L + T
Sbjct: 456 SIYKNINKRLSTLEERKKAFDEIVEKILTNYGKHNAKNMNFTQLLHELNST 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,327
Number of Sequences: 5004
Number of extensions: 51406
Number of successful extensions: 208
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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