Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f24
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0413 + 25032061-25032304,25032604-25032627,25033618-25033940     33   0.25 
05_01_0336 - 2656774-2656992,2657112-2657326,2657611-2657812           31   1.3  
09_04_0085 + 14441123-14443507,14443731-14443787                       28   7.1  
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651           28   7.1  
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    28   9.4  

>04_04_0413 + 25032061-25032304,25032604-25032627,25033618-25033940
          Length = 196

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
 Frame = -2

Query: 402 STSNYSRFNKSTKKRMKSDFIDILKRELTNSSLGSVEPQNFY---------QSLKFIAKT 250
           STS   + +    K M+  F+D+L  EL    + + E  +           Q+ ++  + 
Sbjct: 87  STSGCGKNDPELSKEMEKQFVDLLNEELKLQQIVAEEHSHHMNATLVEAKRQATQYQREA 146

Query: 249 KKANAKLKYADEMRDKNPECVFKRRKIIAKSRKNRRNI 136
           +K NA  +  +E R+++   + K +K+ A   +  R +
Sbjct: 147 EKCNAATETCEEARERSEAAISKEKKLTALWEQRARQL 184


>05_01_0336 - 2656774-2656992,2657112-2657326,2657611-2657812
          Length = 211

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 115 KRFRTTNNISSILPRFRDDLSSLEHAFGIFVA 210
           K FR+ N+I+  LPRF++ L ++   F  +VA
Sbjct: 38  KTFRSVNSITMGLPRFKEGLRNIRDVFDQYVA 69


>09_04_0085 + 14441123-14443507,14443731-14443787
          Length = 813

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 462 KSDNRKPKLHEKNRLKSTPQSTSNYSRFNKS 370
           +SDNR P LH++N+      ST N +   KS
Sbjct: 783 RSDNRAPFLHKRNKQTKLKLSTKNMNHPMKS 813


>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
          Length = 642

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 462 KSDNRKPKLHEKNRLKSTPQSTSNYSRFNKS 370
           +SDNR P LH++N+      ST N +   KS
Sbjct: 612 RSDNRAPFLHKRNKQTKLKLSTKNMNHPMKS 642


>09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,
            3746554-3748102,3748183-3748418
          Length = 769

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 30/162 (18%), Positives = 63/162 (38%), Gaps = 4/162 (2%)
 Frame = -2

Query: 651  KLKLSESNLGFEIEESVAKKLVDNNIEVATKINDSNKKIVKPTTNYYDNNFVLEDYLSYK 472
            +L ++   L      S  + + D NI   T   +   ++VK    Y+D +++L +    K
Sbjct: 595  ELSVANKLLLISYNSSRPRLIPDRNITYKTAFKNVKARVVKDDVGYFDFHWLLHNPNIRK 654

Query: 471  TVFKSDNRKPKLHEKNRLKSTPQSTSNYSRFNKSTKKRMKSDFIDILKRELTNSSLGSVE 292
                 D     L E    ++     +N    N+          ++I++R+     L  + 
Sbjct: 655  FEVYIDCEDATLEEVEEAEAAAWCAAN-DHPNRPA--------LEIIRRDEDKMMLFDIH 705

Query: 291  PQNFYQSLKF----IAKTKKANAKLKYADEMRDKNPECVFKR 178
             + F  S+ +    + + ++A A  +YA ++    P    KR
Sbjct: 706  QEKFSVSINYENASLEEVEEAEAAARYAVDVHLNRPTLELKR 747


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,883,387
Number of Sequences: 37544
Number of extensions: 249418
Number of successful extensions: 731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)