Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f24
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 32 0.39
AF040643-2|AAB94961.1| 471|Caenorhabditis elegans Hypothetical ... 31 0.90
AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like p... 31 1.2
AF098992-3|AAC67458.1| 323|Caenorhabditis elegans Hypothetical ... 31 1.2
AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolo... 31 1.2
AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical ... 29 2.8
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 29 2.8
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 29 2.8
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 29 4.8
U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase ... 29 4.8
U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase ... 29 4.8
U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase ... 29 4.8
U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase ... 29 4.8
U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase ... 29 4.8
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 28 6.4
Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical pr... 28 8.4
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 28 8.4
AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical... 28 8.4
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
protein C09H6.1b protein.
Length = 1309
Score = 32.3 bits (70), Expect = 0.39
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Frame = -2
Query: 462 KSDNRKPKLHEKNRLKSTPQSTSNYSRFNKSTKKR-MKSDFIDILKRELTNSSLGSVEPQ 286
+ D+ P L + ++ + + + K TK+R KS ++ K L +SS SV P
Sbjct: 237 REDDGPPVLIREAPVRKSNRPMKPTQKAQKMTKQRERKSKTVESPKGSLPSSSASSVTPP 296
Query: 285 NFYQSLK----FIAKTKKANAKLKYADEMRDKNPECVFKRRKIIAKSR 154
+ ++ F+ TKK K ++R + P C F + +R
Sbjct: 297 PVRKDVEKPKIFVKTTKKNLKKTMKITKVRQRCPHCPFTTSTVTRLNR 344
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
protein C09H6.1a protein.
Length = 1311
Score = 32.3 bits (70), Expect = 0.39
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Frame = -2
Query: 462 KSDNRKPKLHEKNRLKSTPQSTSNYSRFNKSTKKR-MKSDFIDILKRELTNSSLGSVEPQ 286
+ D+ P L + ++ + + + K TK+R KS ++ K L +SS SV P
Sbjct: 237 REDDGPPVLIREAPVRKSNRPMKPTQKAQKMTKQRERKSKTVESPKGSLPSSSASSVTPP 296
Query: 285 NFYQSLK----FIAKTKKANAKLKYADEMRDKNPECVFKRRKIIAKSR 154
+ ++ F+ TKK K ++R + P C F + +R
Sbjct: 297 PVRKDVEKPKIFVKTTKKNLKKTMKITKVRQRCPHCPFTTSTVTRLNR 344
>AF040643-2|AAB94961.1| 471|Caenorhabditis elegans Hypothetical
protein F14D2.7 protein.
Length = 471
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = -2
Query: 657 TNKLKLSESNLGFEIEESVAKKLVDNNIEVATKINDSNKKIVKPTTNYYDNNFVLEDYLS 478
T +LK E N FE ++ +NN+E T+I + K T N +NN L D
Sbjct: 363 TRELK-KEGN--FEETKNPNTTTKNNNVEAITEIQKDQAEHAKDTNNNNNNNEHLHD--E 417
Query: 477 YKTVFKSDNRKPKLH 433
Y + DN + + H
Sbjct: 418 YNIIQTEDNNEEEKH 432
>AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like
protein ICP-1 protein.
Length = 622
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -2
Query: 300 SVEPQNFYQSLKFIAKTKKANAKLKYADEMRDKNPECVFKRRKIIAKSRKNRRNIVGSTK 121
+V P+ ++ + F K NA++K+ADE+R K E K+R+ K + R ++ K
Sbjct: 203 AVVPRTPHRVIPFNDAEKDPNARMKHADELRMKELE---KKREKARKDEEKRNAVMERRK 259
Query: 120 TLNAVQ 103
V+
Sbjct: 260 EQERVR 265
>AF098992-3|AAC67458.1| 323|Caenorhabditis elegans Hypothetical
protein F53C3.7 protein.
Length = 323
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 474 KTVFKSDNRKPKLHEKNRLK-STPQSTSNYSRFNKSTKKRMKS 349
K + N++ L +K R + STP N+ R NKS K++M S
Sbjct: 262 KGTYLKKNQESGLGDKKRRRTSTPTEEENHLRKNKSVKRKMSS 304
>AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolog
protein 1 protein.
Length = 622
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -2
Query: 300 SVEPQNFYQSLKFIAKTKKANAKLKYADEMRDKNPECVFKRRKIIAKSRKNRRNIVGSTK 121
+V P+ ++ + F K NA++K+ADE+R K E K+R+ K + R ++ K
Sbjct: 203 AVVPRTPHRVIPFNDAEKDPNARMKHADELRMKELE---KKREKARKDEEKRNAVMERRK 259
Query: 120 TLNAVQ 103
V+
Sbjct: 260 EQERVR 265
>AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical
protein C24H12.4b protein.
Length = 567
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -2
Query: 270 LKFIAKTKKANAKLKYADEMRDKNPECVFKRRK-IIAKSRKNRR 142
+K K +KA K++ + E+RDKN E + ++RK + KS+ +R
Sbjct: 24 VKEAPKKQKAGKKIEVSVELRDKNEEKMGRKRKHRMKKSQAEKR 67
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -2
Query: 270 LKFIAKTKKANAKLKYADEMRDKNPECVFKRRK-IIAKSRKNRR 142
+K K +KA K++ + E+RDKN E + ++RK + KS+ +R
Sbjct: 24 VKEAPKKQKAGKKIEVSVELRDKNEEKMGRKRKHRMKKSQAEKR 67
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/107 (26%), Positives = 45/107 (42%)
Frame = -2
Query: 462 KSDNRKPKLHEKNRLKSTPQSTSNYSRFNKSTKKRMKSDFIDILKRELTNSSLGSVEPQN 283
+ + KP+ K K+ S+S KS+KKR K + E +S E
Sbjct: 288 EDEEEKPEKRSKKSKKAVIDSSSEDEEEEKSSKKRSKKSKKE--SDEEQQASDSEEEVVE 345
Query: 282 FYQSLKFIAKTKKANAKLKYADEMRDKNPECVFKRRKIIAKSRKNRR 142
++ K KT K A + ++E E V K++K S+ N+R
Sbjct: 346 VKKNSKSPKKTPKKTAVKEESEESSGDEEEEVVKKKK---SSKINKR 389
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
protein F25C8.3b protein.
Length = 3175
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -2
Query: 696 TTFSACDMKESLETNKLKLSESNLGFEIEESVAKK---LVDNNIEVATKINDSNKKIVKP 526
T + + K LE K+K+ E + EIE K L+D + V K + IV+
Sbjct: 275 TDVTVLNEKRKLEEEKMKMKEDYVAIEIEAPSLKPNDLLIDMSQGVRNKEFERTSSIVRS 334
Query: 525 TTNYYDN 505
+ Y N
Sbjct: 335 VSEYKTN 341
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
protein F25C8.3a protein.
Length = 3184
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -2
Query: 696 TTFSACDMKESLETNKLKLSESNLGFEIEESVAKK---LVDNNIEVATKINDSNKKIVKP 526
T + + K LE K+K+ E + EIE K L+D + V K + IV+
Sbjct: 275 TDVTVLNEKRKLEEEKMKMKEDYVAIEIEAPSLKPNDLLIDMSQGVRNKEFERTSSIVRS 334
Query: 525 TTNYYDN 505
+ Y N
Sbjct: 335 VSEYKTN 341
>U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase C2
B isoform protein.
Length = 682
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 215 RCATKIPNACSRDERSSRNRGRIE 144
RC +PN C D R R RIE
Sbjct: 144 RCVKNVPNMCGTDNTEKRGRLRIE 167
>U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase C2
A isoform protein.
Length = 680
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 215 RCATKIPNACSRDERSSRNRGRIE 144
RC +PN C D R R RIE
Sbjct: 144 RCVKNVPNMCGTDNTEKRGRLRIE 167
>U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase c
protein 2, isoformc protein.
Length = 936
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 215 RCATKIPNACSRDERSSRNRGRIE 144
RC +PN C D R R RIE
Sbjct: 284 RCVKNVPNMCGTDNTEKRGRLRIE 307
>U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase c
protein 2, isoformb protein.
Length = 682
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 215 RCATKIPNACSRDERSSRNRGRIE 144
RC +PN C D R R RIE
Sbjct: 144 RCVKNVPNMCGTDNTEKRGRLRIE 167
>U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase c
protein 2, isoforma protein.
Length = 680
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 215 RCATKIPNACSRDERSSRNRGRIE 144
RC +PN C D R R RIE
Sbjct: 144 RCVKNVPNMCGTDNTEKRGRLRIE 167
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = -2
Query: 510 DNNFVLEDYLSYKTVFKSDNRKPKLHEKNRLKSTPQSTSNYSRFNKSTKKRMKSDFIDIL 331
D N V + + + + + D K K+ LK+TP YSR + T + ++ ++
Sbjct: 236 DMNVVQDWRRNVENICEMDGEMRKRQLKDLLKTTPDGVFFYSRLHIDTTYNLGDAYVTVI 295
Query: 330 KRELTN 313
E N
Sbjct: 296 LGETMN 301
>Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical
protein W08D2.3b protein.
Length = 559
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 536 IFLLESFIFVATSILLSTSFLATDSSISKPRLDSLNFNLFVSRLSFMSQALK 691
+F+ +F+ + +++ S L+ + I + + NLFVSR LK
Sbjct: 440 LFIAFNFVAIVILVIILVSILSLHAQIERMQASQSGLNLFVSRFLSGESLLK 491
>Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical
protein W08D2.3a protein.
Length = 562
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 536 IFLLESFIFVATSILLSTSFLATDSSISKPRLDSLNFNLFVSRLSFMSQALK 691
+F+ +F+ + +++ S L+ + I + + NLFVSR LK
Sbjct: 443 LFIAFNFVAIVILVIILVSILSLHAQIERMQASQSGLNLFVSRFLSGESLLK 494
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 27.9 bits (59), Expect = 8.4
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 2/148 (1%)
Frame = -2
Query: 678 DMKESLETNKLKLSESNLGFE--IEESVAKKLVDNNIEVATKINDSNKKIVKPTTNYYDN 505
+++E + + KL E F +EE + + N +E K N+ +KK++K +
Sbjct: 878 ELEEVEKQGREKLLEKEREFRKTMEEMEQNEEIFNVLE--RKYNEQHKKVMKMNDVLREY 935
Query: 504 NFVLEDYLSYKTVFKSDNRKPKLHEKNRLKSTPQSTSNYSRFNKSTKKRMKSDFIDILKR 325
+E KT +++N+K + +NR S+YS K + KS ID L+
Sbjct: 936 ERKIEQLNMEKTDLENENQKLR-ETQNR------QDSHYSNLEKEVME--KSSLIDELQN 986
Query: 324 ELTNSSLGSVEPQNFYQSLKFIAKTKKA 241
++ S + E + L+ + +KA
Sbjct: 987 QIQKLSDENNEQRLTIAKLETALEDEKA 1014
>AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical
protein K09D9.3 protein.
Length = 311
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 101 T*TALSVFVLPTIFLLFFLDFAMIFRLLNTHSGFLSRISSAYFNFALAFL 250
T T +S F+ IFL+FF+DF R+L S L + + NF A+L
Sbjct: 148 TRTKISFFI---IFLIFFVDF---LRVLALFSAILKQTPPSKINFQDAYL 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,422,180
Number of Sequences: 27780
Number of extensions: 274115
Number of successful extensions: 1138
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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