Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f24
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    29   0.048
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.8  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   3.1  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   3.1  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           23   4.1  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           23   4.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.2  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   7.2  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 29.1 bits (62), Expect = 0.048
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -3

Query: 146 EEILLVVRKRLTQFKSLD-NFQQFLAFKVIVNNCDNIHKNTHCLNRS 9
           +E +LV+  R+ +  + D NF   + F+++  N   + +NTHC+N +
Sbjct: 373 DEYMLVLSNRMQKIVNDDFNFDD-VNFRILGANVKELIRNTHCVNNN 418



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 585 DNNIEVATKINDSNKKIVKPTTNYYDNN 502
           ++NI+     ND+N+K  K   N   NN
Sbjct: 420 NDNIQNTNNQNDNNQKNNKKNANNQKNN 447


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -3

Query: 143 EILLVVRKRLTQFKSLDNFQQFLAFKVIVNNCDNIHKNTHCLN 15
           E +L V  R+ +     +F   + F++++ N +++ KNT C++
Sbjct: 374 EYVLAVSNRIQKVIYGFDFND-VNFRILIANVNDLIKNTRCIS 415


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 219 DEMRDKNPECVFKRRKIIAKSRKNRRNIV 133
           DE   +  EC+ K+  I+ +S   + NIV
Sbjct: 56  DEKPQRYNECILKQFNIVDESGNFKENIV 84


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 219 DEMRDKNPECVFKRRKIIAKSRKNRRNIV 133
           DE   +  EC+ K+  I+ +S   + NIV
Sbjct: 56  DEKPQRYNECILKQFNIVDESGNFKENIV 84


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 585 DNNIEVATKINDSNKKIVKPT 523
           DN I+ AT + +  KK+V+ T
Sbjct: 15  DNRIDQATGLTERQKKLVQNT 35


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 585 DNNIEVATKINDSNKKIVKPT 523
           DN I+ AT + +  KK+V+ T
Sbjct: 15  DNRIDQATGLTERQKKLVQNT 35


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/32 (21%), Positives = 17/32 (53%)
 Frame = -3

Query: 194 NACSRDERSSRNRGRIEEILLVVRKRLTQFKS 99
           N C + E   R +  ++++ ++   R+  +KS
Sbjct: 115 NVCLKFEEQKRRKKSLDDVKILRNDRIDSYKS 146


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 531 KPTTNYYDNNFVLEDYLSY 475
           K   N+Y NN  +E +L+Y
Sbjct: 303 KRKVNFYPNNQDIEKFLNY 321


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 615 IEESVAKKLVDNNIEVATKINDSNKKIV 532
           IEE  AKK + N  +V +K ND+ K+++
Sbjct: 29  IEE--AKKTIKNLRKVCSKKNDTPKELL 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,423
Number of Sequences: 438
Number of extensions: 3762
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)