Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f19
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 258 5e-70
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 257 2e-69
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.62
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 1.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 28 1.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.5
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 3.3
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 4.4
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 5.8
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 5.8
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 5.8
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 7.7
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.7
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 258 bits (633), Expect = 5e-70
Identities = 126/263 (47%), Positives = 170/263 (64%), Gaps = 2/263 (0%)
Frame = -1
Query: 811 KGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELP 632
+GKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELP
Sbjct: 25 EGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELP 84
Query: 631 RYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRC 452
RYG+K GL N+ AAY+TG + E +++GP F+
Sbjct: 85 RYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKV 144
Query: 451 YLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHV 272
+LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G HV
Sbjct: 145 FLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHV 204
Query: 271 AEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDS 98
AEYM L DDE+ +++QFS I G+ +D +E IY +A+ IR DPS +K K+
Sbjct: 205 AEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFK 264
Query: 97 VKQKRWNKRKLTLAERKNRIKQK 29
+ ++ +RKLT ERK R K
Sbjct: 265 AESLKYTQRKLTAEERKERFNAK 287
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -3
Query: 842 RYQVKFKRRREGE 804
RYQ K++RRREG+
Sbjct: 15 RYQTKYRRRREGK 27
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 257 bits (629), Expect = 2e-69
Identities = 126/263 (47%), Positives = 169/263 (64%), Gaps = 2/263 (0%)
Frame = -1
Query: 811 KGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELP 632
+GKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELP
Sbjct: 25 EGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELP 84
Query: 631 RYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRC 452
RYG+K GL N+ AAY+TG + E +++GP F+
Sbjct: 85 RYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKV 144
Query: 451 YLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHV 272
+LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G HV
Sbjct: 145 FLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHV 204
Query: 271 AEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDS 98
AEYM L DDE+ +++QFS I G+ +D +E IY +A+ IR DPS +K K+
Sbjct: 205 AEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFK 264
Query: 97 VKQKRWNKRKLTLAERKNRIKQK 29
+ + +RKLT ERK R K
Sbjct: 265 AESLKHTQRKLTAEERKERFNAK 287
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -3
Query: 842 RYQVKFKRRREGE 804
RYQ K++RRREG+
Sbjct: 15 RYQTKYRRRREGK 27
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 178 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 20
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 151 EAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 20
E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = -1
Query: 163 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFIKRL 5
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + K++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQM 761
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -1
Query: 247 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 86
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 553 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 645
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 181 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 68
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 5.8
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = -1
Query: 229 FKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAER 50
F ++ +YIKL A + + + + A P KE+KK K KR T A
Sbjct: 392 FTKEDGEYIKL--IAGVMRSSGCEVPNWVMALPK-PSKEMKKKLKKSPPKRKRITTRASY 448
Query: 49 KNRIKQKKASFIKRLQ 2
+ +Q+K +IK+++
Sbjct: 449 DRQKEQRKKEYIKKVK 464
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -1
Query: 250 EQDDEDSFKRQFSKYIKLGVTADA--IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 77
E+ + S K++ K G D +E I KK + HKKK+ + S K+K +
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKK------EHKKKDKESSSKKRKSGS 219
Query: 76 KRKLTLAERKNRIKQKKAS 20
K ++K ++K K S
Sbjct: 220 SDKEEKKKKKIKLKDKPES 238
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 175 EAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKRKLTLAERKNRIKQKKASFIKR 8
EAI + EA RA +EL + QKR +R E K R +++ A ++R
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLER 844
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -1
Query: 190 TADAIEAIYKKAHEAIRADPSHKKKELK 107
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 7.7
Identities = 23/101 (22%), Positives = 39/101 (38%)
Frame = -1
Query: 316 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 137
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 136 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 14
+ KKE D +K + ++ R + K S +
Sbjct: 419 SSENNKKE---DDLKDSTGDLNTTQVSSRVDNFLLKLPSMV 456
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 163 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 8
KK +E + SH+K K KRKL + +++ K+ +++ IK+
Sbjct: 27 KKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQSNIIKK 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,034
Number of Sequences: 5004
Number of extensions: 69576
Number of successful extensions: 295
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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