Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f18
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.33 
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     28   1.4  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   2.4  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    27   4.1  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   5.5  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.5  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   7.2  
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           26   7.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   9.5  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   9.5  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   9.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 30/157 (19%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
 Frame = +3

Query: 117 PTRPSLVSVRGSAVTVWTATKASLIFVCKFLRS*TNSNFNTSEG*LTKLTSVCRGSGCGE 296
           PT  S   +  S+V   +++ +S         S + S+  ++    +  +S    S    
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261

Query: 297 VFSTLAKAASLILGSG*GPMLAT-VQTLLTPALNA*LEKSRLSNGLEDTTLGAFFFSSTL 473
             S+ + ++S+I  S       T   + ++ + ++    +  S+ +  ++  +  FSSTL
Sbjct: 262 TASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321

Query: 474 AFLYLSTLSAYSNRTAYDNSQLSCSFSVPSAAGLTKS 584
           +   +S+ S++S+     +S +S S S PS++  + +
Sbjct: 322 SSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSST 358


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 658 KIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNE 545
           K+E +  L+N+D + +K+ YN      VSP   G LN+
Sbjct: 19  KVEMKPFLKNLDKNLFKKTYNLVAAK-VSPKKVGLLNK 55


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 283 EPLQTEVNLVNQPSDVLKLLFVQDLRNLQTKINEALVA 170
           E  +  VN+     D LK L  +DLR +QTK  E+L A
Sbjct: 190 EASRLTVNIYRWTGDPLKDLLFKDLRPVQTKELESLFA 227


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 778 LFKLKLSALGHPNPEFFNCEDE--KEYRSVV-LWLE 680
           L K +LS L H NPE F  ++E  K+Y     LW +
Sbjct: 138 LLKTQLSNLNHCNPETFELKNENTKKYMEAANLWTD 173


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 430 NPLDNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLA 320
           N   +LDF  +AF A +    TV +  P  DPK  L+
Sbjct: 355 NEEGSLDFLHRAFSATIKEYHTVWTATPRLDPKTGLS 391


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 340 DPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPSD 239
           +PK+ LA +A +  T P  EPL  E     +P D
Sbjct: 348 NPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFD 381


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = -1

Query: 700 SVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY-----NTYQKDLVSPAAEGTLNEQLN 536
           S++ W  D+++R+Y   D + L ++  DF   ++     +T Q  ++       +N   N
Sbjct: 353 SIIYWDADKELRNYPRLDAKKLWDLTEDFLDLSFSLSRLSTLQAAIIFLTGRPWINVAGN 412

Query: 535 W-LLSYAVRL 509
           W +L+ A+ L
Sbjct: 413 WSILTRAIAL 422


>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 421 DNLDFSSQAFKAGVNRVCTVASIGPHP 341
           DN++ S +A     N  C  +++G HP
Sbjct: 60  DNVENSEEALNLATNYECFTSTVGVHP 86


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 366 VQTLLTPALNA*LEKSRLSNGLEDTTLGAF 455
           +Q   T   NA  EKSR+ N LED T   F
Sbjct: 90  LQLTETKCRNAESEKSRVENELEDLTSSLF 119


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 742 NPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGL 635
           NPEFFN +   +  S+     D  I  Y++E  E L
Sbjct: 40  NPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYL 75


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/45 (26%), Positives = 28/45 (62%)
 Frame = -1

Query: 304 LKTSPHPEPLQTEVNLVNQPSDVLKLLFVQDLRNLQTKINEALVA 170
           L+T  + + L+  ++  N+P+D+ KLL +  + +L  K+N+  ++
Sbjct: 311 LRTLENLKHLRITLSYFNKPTDIAKLLVIARIPSL-VKLNDVNIS 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,586
Number of Sequences: 5004
Number of extensions: 53157
Number of successful extensions: 184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)