Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f18
(805 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ525179-1|ABF56619.1| 244|Homo sapiens Lcrp369 protein. 171 2e-42
BC001722-1|AAH01722.1| 244|Homo sapiens chromosome 14 open read... 171 2e-42
AF151857-1|AAD34094.1| 244|Homo sapiens CGI-99 protein protein. 171 2e-42
AF100755-1|AAD43019.1| 244|Homo sapiens homeobox prox 1 protein. 171 2e-42
AF087877-1|AAP97177.1| 244|Homo sapiens CLE7 protein. 171 2e-42
AY817175-1|AAV54070.1| 244|Homo sapiens CLE protein. 169 1e-41
U26555-1|AAA67565.1| 1642|Homo sapiens versican V2 core protein ... 30 8.5
U16306-1|AAA65018.1| 3396|Homo sapiens chondroitin sulfate prote... 30 8.5
AB209491-1|BAD92728.1| 3410|Homo sapiens chondroitin sulfate pro... 30 8.5
>DQ525179-1|ABF56619.1| 244|Homo sapiens Lcrp369 protein.
Length = 244
Score = 171 bits (417), Expect = 2e-42
Identities = 97/244 (39%), Positives = 138/244 (56%), Gaps = 22/244 (9%)
Frame = -1
Query: 778 LFKLKLSALGHPNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY 599
+F+ KL+AL + NP FNC+DE E+R+ ++WLEDQKIRHYKIEDR LRNI S W + +
Sbjct: 1 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFF 60
Query: 598 NTYQKDLVSPAAEGTLNEQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPL 422
Y +D+ P E ++WLL AVRLEY DN + ++ PL
Sbjct: 61 EKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPL 120
Query: 421 DNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQ 272
NLD ++ FKAGV + + I H D + L A+ V K + E L
Sbjct: 121 INLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLP 180
Query: 271 TEVN-----------LVNQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLG 125
++ ++N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG
Sbjct: 181 VALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLG 240
Query: 124 RVGR 113
+VGR
Sbjct: 241 KVGR 244
>BC001722-1|AAH01722.1| 244|Homo sapiens chromosome 14 open reading
frame 166 protein.
Length = 244
Score = 171 bits (417), Expect = 2e-42
Identities = 97/244 (39%), Positives = 138/244 (56%), Gaps = 22/244 (9%)
Frame = -1
Query: 778 LFKLKLSALGHPNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY 599
+F+ KL+AL + NP FNC+DE E+R+ ++WLEDQKIRHYKIEDR LRNI S W + +
Sbjct: 1 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFF 60
Query: 598 NTYQKDLVSPAAEGTLNEQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPL 422
Y +D+ P E ++WLL AVRLEY DN + ++ PL
Sbjct: 61 EKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPL 120
Query: 421 DNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQ 272
NLD ++ FKAGV + + I H D + L A+ V K + E L
Sbjct: 121 INLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLP 180
Query: 271 TEVN-----------LVNQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLG 125
++ ++N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG
Sbjct: 181 VALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLG 240
Query: 124 RVGR 113
+VGR
Sbjct: 241 KVGR 244
>AF151857-1|AAD34094.1| 244|Homo sapiens CGI-99 protein protein.
Length = 244
Score = 171 bits (417), Expect = 2e-42
Identities = 97/244 (39%), Positives = 138/244 (56%), Gaps = 22/244 (9%)
Frame = -1
Query: 778 LFKLKLSALGHPNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY 599
+F+ KL+AL + NP FNC+DE E+R+ ++WLEDQKIRHYKIEDR LRNI S W + +
Sbjct: 1 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFF 60
Query: 598 NTYQKDLVSPAAEGTLNEQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPL 422
Y +D+ P E ++WLL AVRLEY DN + ++ PL
Sbjct: 61 EKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPL 120
Query: 421 DNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQ 272
NLD ++ FKAGV + + I H D + L A+ V K + E L
Sbjct: 121 INLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLP 180
Query: 271 TEVN-----------LVNQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLG 125
++ ++N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG
Sbjct: 181 VALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLG 240
Query: 124 RVGR 113
+VGR
Sbjct: 241 KVGR 244
>AF100755-1|AAD43019.1| 244|Homo sapiens homeobox prox 1 protein.
Length = 244
Score = 171 bits (417), Expect = 2e-42
Identities = 97/244 (39%), Positives = 138/244 (56%), Gaps = 22/244 (9%)
Frame = -1
Query: 778 LFKLKLSALGHPNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY 599
+F+ KL+AL + NP FNC+DE E+R+ ++WLEDQKIRHYKIEDR LRNI S W + +
Sbjct: 1 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFF 60
Query: 598 NTYQKDLVSPAAEGTLNEQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPL 422
Y +D+ P E ++WLL AVRLEY DN + ++ PL
Sbjct: 61 EKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPL 120
Query: 421 DNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQ 272
NLD ++ FKAGV + + I H D + L A+ V K + E L
Sbjct: 121 INLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLP 180
Query: 271 TEVN-----------LVNQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLG 125
++ ++N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG
Sbjct: 181 VALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLG 240
Query: 124 RVGR 113
+VGR
Sbjct: 241 KVGR 244
>AF087877-1|AAP97177.1| 244|Homo sapiens CLE7 protein.
Length = 244
Score = 171 bits (417), Expect = 2e-42
Identities = 97/244 (39%), Positives = 138/244 (56%), Gaps = 22/244 (9%)
Frame = -1
Query: 778 LFKLKLSALGHPNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY 599
+F+ KL+AL + NP FNC+DE E+R+ ++WLEDQKIRHYKIEDR LRNI S W + +
Sbjct: 1 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFF 60
Query: 598 NTYQKDLVSPAAEGTLNEQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPL 422
Y +D+ P E ++WLL AVRLEY DN + ++ PL
Sbjct: 61 EKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPL 120
Query: 421 DNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQ 272
NLD ++ FKAGV + + I H D + L A+ V K + E L
Sbjct: 121 INLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLP 180
Query: 271 TEVN-----------LVNQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLG 125
++ ++N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG
Sbjct: 181 VALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLG 240
Query: 124 RVGR 113
+VGR
Sbjct: 241 KVGR 244
>AY817175-1|AAV54070.1| 244|Homo sapiens CLE protein.
Length = 244
Score = 169 bits (410), Expect = 1e-41
Identities = 96/244 (39%), Positives = 137/244 (56%), Gaps = 22/244 (9%)
Frame = -1
Query: 778 LFKLKLSALGHPNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY 599
+F+ KL+AL + NP FNC+DE E+R+ ++WLEDQKI HYKIEDR LRNI S W + +
Sbjct: 1 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIGHYKIEDRGNLRNIHSSDWPKFF 60
Query: 598 NTYQKDLVSPAAEGTLNEQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPL 422
Y +D+ P E ++WLL AVRLEY DN + ++ PL
Sbjct: 61 EKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPL 120
Query: 421 DNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQ 272
NLD ++ FKAGV + + I H D + L A+ V K + E L
Sbjct: 121 INLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLP 180
Query: 271 TEVN-----------LVNQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLG 125
++ ++N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG
Sbjct: 181 VALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLG 240
Query: 124 RVGR 113
+VGR
Sbjct: 241 KVGR 244
>U26555-1|AAA67565.1| 1642|Homo sapiens versican V2 core protein
precursor protein.
Length = 1642
Score = 30.3 bits (65), Expect = 8.5
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 316 LAKVLKTSPHPEPLQTEVNLVNQPSDVLKLLFVQDL--RNLQTKINEALVAVQTVTADPR 143
L K L T+P P +TE+ L D + + + + +LQT++ +T+ + R
Sbjct: 636 LGKYLSTTPFPSQHRTEIELFPYSGDKILVEGISTVIYPSLQTEMTHRRERTETLIPEMR 695
Query: 142 TDT 134
TDT
Sbjct: 696 TDT 698
>U16306-1|AAA65018.1| 3396|Homo sapiens chondroitin sulfate
proteoglycan versican V0 splice-variant precursor
peptide protein.
Length = 3396
Score = 30.3 bits (65), Expect = 8.5
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 316 LAKVLKTSPHPEPLQTEVNLVNQPSDVLKLLFVQDL--RNLQTKINEALVAVQTVTADPR 143
L K L T+P P +TE+ L D + + + + +LQT++ +T+ + R
Sbjct: 636 LGKYLSTTPFPSQHRTEIELFPYSGDKILVEGISTVIYPSLQTEMTHRRERTETLIPEMR 695
Query: 142 TDT 134
TDT
Sbjct: 696 TDT 698
>AB209491-1|BAD92728.1| 3410|Homo sapiens chondroitin sulfate
proteoglycan 2 (versican) variant protein.
Length = 3410
Score = 30.3 bits (65), Expect = 8.5
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 316 LAKVLKTSPHPEPLQTEVNLVNQPSDVLKLLFVQDL--RNLQTKINEALVAVQTVTADPR 143
L K L T+P P +TE+ L D + + + + +LQT++ +T+ + R
Sbjct: 650 LGKYLSTTPFPSQHRTEIELFPYSGDKILVEGISTVIYPSLQTEMTHRRERTETLIPEMR 709
Query: 142 TDT 134
TDT
Sbjct: 710 TDT 712
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,577,255
Number of Sequences: 237096
Number of extensions: 1781176
Number of successful extensions: 3592
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3586
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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