Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f18
         (805 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118399-1|AAM48428.1|  250|Drosophila melanogaster RE59232p pro...   142   4e-34
AE014297-2395|AAF55456.2|  250|Drosophila melanogaster CG31249-P...   142   4e-34
BT004470-1|AAO42634.1| 1248|Drosophila melanogaster SD07139p pro...    30   4.3  
AE014298-1656|AAS65320.1| 1962|Drosophila melanogaster CG1817-PD...    30   4.3  
AE014298-1655|AAS65319.1| 1962|Drosophila melanogaster CG1817-PA...    30   4.3  
AE014297-2960|AAF55869.3| 1251|Drosophila melanogaster CG5874-PA...    30   4.3  

>AY118399-1|AAM48428.1|  250|Drosophila melanogaster RE59232p
           protein.
          Length = 250

 Score =  142 bits (345), Expect = 4e-34
 Identities = 94/246 (38%), Positives = 132/246 (53%), Gaps = 27/246 (10%)
 Frame = -1

Query: 772 KLKLSALGHPNPEF-FNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDS-DFWKEAY 599
           K+KL  LG P+ +      D KE+ + VLWLEDQKIR Y IEDR  LR +D+ + WKE Y
Sbjct: 5   KMKLEVLGRPDVDIPVVMSDRKEFANTVLWLEDQKIRLYSIEDRCKLRTVDNPEIWKEGY 64

Query: 598 NTYQKDLVSPAAEGTLNEQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVVSSNPL- 422
             Y  DL  P  E T  EQL W++SYAVRL++ D+ D                  S    
Sbjct: 65  LKYCADLSMPPLE-TRQEQLAWIVSYAVRLDFLDDPDQFASINTKQVPPQSNGKQSQQRV 123

Query: 421 -----DNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLAALAKVL--KTSP--------- 290
                 N++   +AF  GV  + +  ++  HP+  ++L A+A+V+  + SP         
Sbjct: 124 QAIFDGNINTQEKAFVDGVRLLASKLNVPHHPNHLLQLEAIARVVHERLSPAAKDRKPVV 183

Query: 289 -HPEPLQTEVNLVNQ-------PSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDT 134
             P P     ++V+        P  +L+LL +Q LR LQT INE +VAVQ +TA+P+TDT
Sbjct: 184 GKPFPFDKGNDVVSSNDSALDLPMRILRLLQIQSLRELQTHINETIVAVQNITANPKTDT 243

Query: 133 KLGRVG 116
           KLG+VG
Sbjct: 244 KLGKVG 249


>AE014297-2395|AAF55456.2|  250|Drosophila melanogaster CG31249-PA
           protein.
          Length = 250

 Score =  142 bits (345), Expect = 4e-34
 Identities = 94/246 (38%), Positives = 132/246 (53%), Gaps = 27/246 (10%)
 Frame = -1

Query: 772 KLKLSALGHPNPEF-FNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDS-DFWKEAY 599
           K+KL  LG P+ +      D KE+ + VLWLEDQKIR Y IEDR  LR +D+ + WKE Y
Sbjct: 5   KMKLEVLGRPDVDIPVVMSDRKEFANTVLWLEDQKIRLYSIEDRCKLRTVDNPEIWKEGY 64

Query: 598 NTYQKDLVSPAAEGTLNEQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVVSSNPL- 422
             Y  DL  P  E T  EQL W++SYAVRL++ D+ D                  S    
Sbjct: 65  LKYCADLSMPPLE-TRQEQLAWIVSYAVRLDFLDDPDQFASINTKQVPPQSNGKQSQQRV 123

Query: 421 -----DNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLAALAKVL--KTSP--------- 290
                 N++   +AF  GV  + +  ++  HP+  ++L A+A+V+  + SP         
Sbjct: 124 QAIFDGNINTQEKAFVDGVRLLASKLNVPHHPNHLLQLEAIARVVHERLSPAAKDRKPVV 183

Query: 289 -HPEPLQTEVNLVNQ-------PSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDT 134
             P P     ++V+        P  +L+LL +Q LR LQT INE +VAVQ +TA+P+TDT
Sbjct: 184 GKPFPFDKGNDVVSSNDSALDLPMRILRLLQIQSLRELQTHINETIVAVQNITANPKTDT 243

Query: 133 KLGRVG 116
           KLG+VG
Sbjct: 244 KLGKVG 249


>BT004470-1|AAO42634.1| 1248|Drosophila melanogaster SD07139p
           protein.
          Length = 1248

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = -1

Query: 400 QAFKAGVNRVCTVASIGPHPDPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPSDVLKLLF 221
           + +KA +  V  VA +    D ++ ++ LA+ +KT P    L TE++       +  +  
Sbjct: 69  EEWKAELEEVIEVAGL----DSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIF-IDM 123

Query: 220 VQDLRNLQTK 191
           V DLR L TK
Sbjct: 124 VNDLRKLVTK 133


>AE014298-1656|AAS65320.1| 1962|Drosophila melanogaster CG1817-PD,
            isoform D protein.
          Length = 1962

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 751  GHPNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAYNTYQ 587
            GH NP    C+D K     VL  + Q+ +  + +  +G  NI +      YNT Q
Sbjct: 1622 GHTNPSSMICKDSKGGNIDVLESQQQQQQQQQQQPNQGGHNITTISAINGYNTLQ 1676


>AE014298-1655|AAS65319.1| 1962|Drosophila melanogaster CG1817-PA,
            isoform A protein.
          Length = 1962

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 751  GHPNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAYNTYQ 587
            GH NP    C+D K     VL  + Q+ +  + +  +G  NI +      YNT Q
Sbjct: 1622 GHTNPSSMICKDSKGGNIDVLESQQQQQQQQQQQPNQGGHNITTISAINGYNTLQ 1676


>AE014297-2960|AAF55869.3| 1251|Drosophila melanogaster CG5874-PA
           protein.
          Length = 1251

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = -1

Query: 400 QAFKAGVNRVCTVASIGPHPDPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPSDVLKLLF 221
           + +KA +  V  VA +    D ++ ++ LA+ +KT P    L TE++       +  +  
Sbjct: 69  EEWKAELEEVIEVAGL----DSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIF-IDM 123

Query: 220 VQDLRNLQTK 191
           V DLR L TK
Sbjct: 124 VNDLRKLVTK 133


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,608,654
Number of Sequences: 53049
Number of extensions: 564440
Number of successful extensions: 1591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1587
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)