Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f17
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 34 0.066
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 33 0.20
U41995-6|AAA83463.2| 419|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z49912-7|CAI70412.1| 554|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z49912-6|CAA90137.1| 615|Caenorhabditis elegans Hypothetical pr... 29 2.5
U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical p... 29 2.5
U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical p... 29 2.5
U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical p... 29 2.5
Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical p... 28 4.4
AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical ... 28 4.4
Z81449-11|CAD44106.2| 410|Caenorhabditis elegans Hypothetical p... 28 5.8
Z81449-10|CAB03766.4| 419|Caenorhabditis elegans Hypothetical p... 28 5.8
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 28 5.8
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z48241-6|CAD44100.2| 410|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z48241-5|CAA88286.4| 419|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ... 28 5.8
AF000198-2|AAB53055.2| 748|Caenorhabditis elegans Hypothetical ... 27 7.6
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 34.3 bits (75), Expect = 0.066
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Frame = -3
Query: 352 LDNIKAKL--KESGIFDWQDASLNDRERKELSKLFDAVEIMTTSRNRQPPNVQNMFSTLR 179
L++ K KL E+ W D ++ E+ ++ A+EI ++RN +QN+ S LR
Sbjct: 1587 LEDTKQKLVEAENSASGWNDDDAWNKNENEIEEVKKALEIEISNRNDTIVKLQNLVSNLR 1646
Query: 178 --LVERVVKKQLKEGQISESLAGKFQ---WEKLSTRQRRERPLYHLDKFANVRMYK 26
L+E LK + E L + + + + R L H D+FA V+M K
Sbjct: 1647 QQLIEASESADLKSLEELEQLKEELRIVSEQNGLLKDSEARLLDHADEFA-VQMDK 1701
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 32.7 bits (71), Expect = 0.20
Identities = 28/134 (20%), Positives = 67/134 (50%)
Frame = -3
Query: 403 KAAYKSGEIPDSSMPITLDNIKAKLKESGIFDWQDASLNDRERKELSKLFDAVEIMTTSR 224
+AA S + + ++ ++ ++AKL+E Q++S +++ +ELS L + + + ++
Sbjct: 680 QAAQSSSSV-EQALRAEIEKLEAKLQEIEKAKMQNSSKREQKVRELSNLNEKMRVEFIAK 738
Query: 223 NRQPPNVQNMFSTLRLVERVVKKQLKEGQISESLAGKFQWEKLSTRQRRERPLYHLDKFA 44
+ ++++ ST+ E VV+K E K + +L TR++R +K
Sbjct: 739 EKIISDLRSELSTIS-TELVVQKATVE-------KTKMDFGELETREKRATADRENEKME 790
Query: 43 NVRMYKNIS*NLKS 2
+R+ + + L++
Sbjct: 791 EIRLRETFAKELET 804
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 32.7 bits (71), Expect = 0.20
Identities = 28/134 (20%), Positives = 67/134 (50%)
Frame = -3
Query: 403 KAAYKSGEIPDSSMPITLDNIKAKLKESGIFDWQDASLNDRERKELSKLFDAVEIMTTSR 224
+AA S + + ++ ++ ++AKL+E Q++S +++ +ELS L + + + ++
Sbjct: 680 QAAQSSSSV-EQALRAEIEKLEAKLQEIEKAKMQNSSKREQKVRELSNLNEKMRVEFIAK 738
Query: 223 NRQPPNVQNMFSTLRLVERVVKKQLKEGQISESLAGKFQWEKLSTRQRRERPLYHLDKFA 44
+ ++++ ST+ E VV+K E K + +L TR++R +K
Sbjct: 739 EKIISDLRSELSTIS-TELVVQKATVE-------KTKMDFGELETREKRATADRENEKME 790
Query: 43 NVRMYKNIS*NLKS 2
+R+ + + L++
Sbjct: 791 EIRLRETFAKELET 804
>U41995-6|AAA83463.2| 419|Caenorhabditis elegans Hypothetical
protein E02C12.6 protein.
Length = 419
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 418 EMTDAKAAYKSGEIPDSSMPITLDNIKAKLKESGIFDWQDAS 293
++ K + G++ S++ TLDN K KLK I DWQ S
Sbjct: 261 DLLGLKPVFIHGDLWQSNIMFTLDNSK-KLKLEAIIDWQSVS 301
>Z49912-7|CAI70412.1| 554|Caenorhabditis elegans Hypothetical
protein T24F1.3b protein.
Length = 554
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 268 LSKLFDAVEIMTTSRNRQPPNVQNMFSTLRLVERVVKK 155
L K F V+ + T PP ++ ++TLR+VER VK+
Sbjct: 223 LPKSFSPVDSLRTKEPSAPP--ESRYATLRVVERYVKE 258
>Z49912-6|CAA90137.1| 615|Caenorhabditis elegans Hypothetical
protein T24F1.3a protein.
Length = 615
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 268 LSKLFDAVEIMTTSRNRQPPNVQNMFSTLRLVERVVKK 155
L K F V+ + T PP ++ ++TLR+VER VK+
Sbjct: 284 LPKSFSPVDSLRTKEPSAPP--ESRYATLRVVERYVKE 319
>U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical
protein F10G7.10c protein.
Length = 1824
Score = 29.1 bits (62), Expect = 2.5
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = -3
Query: 373 DSSMPITLDNIKAKLKESGIFDWQDASLN-DRERKELSKLFDAVEIMTTSRNRQPPNVQN 197
D +PI + I+ L+ +G+ DA ++ + ER+ +LFD E+ T R+P +
Sbjct: 862 DPRIPIVGEFIRRHLEAAGV----DADIDVEMEREFDPRLFDDEEVERTIVIREPEWIDP 917
Query: 196 MF-STLRLVERVVKKQLKEGQISE 128
MF +LV +V ++ G E
Sbjct: 918 MFWGMFKLVAELVVVRVNSGASPE 941
>U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical
protein F10G7.10a protein.
Length = 2025
Score = 29.1 bits (62), Expect = 2.5
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = -3
Query: 373 DSSMPITLDNIKAKLKESGIFDWQDASLN-DRERKELSKLFDAVEIMTTSRNRQPPNVQN 197
D +PI + I+ L+ +G+ DA ++ + ER+ +LFD E+ T R+P +
Sbjct: 862 DPRIPIVGEFIRRHLEAAGV----DADIDVEMEREFDPRLFDDEEVERTIVIREPEWIDP 917
Query: 196 MF-STLRLVERVVKKQLKEGQISE 128
MF +LV +V ++ G E
Sbjct: 918 MFWGMFKLVAELVVVRVNSGASPE 941
>U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical
protein F10G7.10b protein.
Length = 1884
Score = 29.1 bits (62), Expect = 2.5
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = -3
Query: 373 DSSMPITLDNIKAKLKESGIFDWQDASLN-DRERKELSKLFDAVEIMTTSRNRQPPNVQN 197
D +PI + I+ L+ +G+ DA ++ + ER+ +LFD E+ T R+P +
Sbjct: 862 DPRIPIVGEFIRRHLEAAGV----DADIDVEMEREFDPRLFDDEEVERTIVIREPEWIDP 917
Query: 196 MF-STLRLVERVVKKQLKEGQISE 128
MF +LV +V ++ G E
Sbjct: 918 MFWGMFKLVAELVVVRVNSGASPE 941
>Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -2
Query: 242 NYDYISQS-TASERAKHVLYSASRRESR*EATQRGTDIRIFSREIPMGETIYTSKKRETA 66
NY+ +SQS T E S +RRE + + R D+R S + + + + +R
Sbjct: 906 NYEKLSQSRTDPEVLAGTTVSRARREKQ-KKRNRRHDVRFHSNPVEIPQNLIEDARRALD 964
Query: 65 VPFR*IRQRQNVQEH 21
VP + +R+ EH
Sbjct: 965 VP---VSERRKFFEH 976
>AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -2
Query: 242 NYDYISQS-TASERAKHVLYSASRRESR*EATQRGTDIRIFSREIPMGETIYTSKKRETA 66
NY+ +SQS T E S +RRE + + R D+R S + + + + +R
Sbjct: 906 NYEKLSQSRTDPEVLAGTTVSRARREKQ-KKRNRRHDVRFHSNPVEIPQNLIEDARRALD 964
Query: 65 VPFR*IRQRQNVQEH 21
VP + +R+ EH
Sbjct: 965 VP---VSERRKFFEH 976
>Z81449-11|CAD44106.2| 410|Caenorhabditis elegans Hypothetical
protein C32A3.3b protein.
Length = 410
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 298 ASLNDRERKELSKLFDAVEIMTTSRNRQPPNVQNMFSTLRLVERVVKKQLKEGQ 137
A+ NDRE +E+ +L AVE + ++++ L VE+ +K + + Q
Sbjct: 52 AAGNDRENEEIMRLSKAVERLEQEKHQRNQQHLKFEEELEQVEKTYRKDIDDLQ 105
>Z81449-10|CAB03766.4| 419|Caenorhabditis elegans Hypothetical
protein C32A3.3a protein.
Length = 419
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 298 ASLNDRERKELSKLFDAVEIMTTSRNRQPPNVQNMFSTLRLVERVVKKQLKEGQ 137
A+ NDRE +E+ +L AVE + ++++ L VE+ +K + + Q
Sbjct: 61 AAGNDRENEEIMRLSKAVERLEQEKHQRNQQHLKFEEELEQVEKTYRKDIDDLQ 114
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical protein
C34E11.3 protein.
Length = 1577
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = -3
Query: 274 KELSKLFDAVEIMTTSRNRQPPNVQNMFSTLRLVERVVK-KQLKEGQISESL-AGKFQWE 101
KE+ +L D + +T +NRQ Q T+R++ +K ++++ +S++ + + E
Sbjct: 1120 KEMDRLNDKITEITAEKNRQKNEAQ---KTIRVLSEQIKVLEIEQKNLSQNKDSQQVVKE 1176
Query: 100 KLSTRQRRERPLYHLDKFANV-RMYK 26
+ + + R + + HL++ + R Y+
Sbjct: 1177 MIESERERLQQIVHLNELQKLTRKYR 1202
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = -3
Query: 274 KELSKLFDAVEIMTTSRNRQPPNVQNMFSTLRLVERVVK-KQLKEGQISESL-AGKFQWE 101
KE+ +L D + +T +NRQ Q T+R++ +K ++++ +S++ + + E
Sbjct: 1120 KEMDRLNDKITEITAEKNRQKNEAQ---KTIRVLSEQIKVLEIEQKNLSQNKDSQQVVKE 1176
Query: 100 KLSTRQRRERPLYHLDKFANV-RMYK 26
+ + + R + + HL++ + R Y+
Sbjct: 1177 MIESERERLQQIVHLNELQKLTRKYR 1202
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical protein
C34E11.3 protein.
Length = 1577
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = -3
Query: 274 KELSKLFDAVEIMTTSRNRQPPNVQNMFSTLRLVERVVK-KQLKEGQISESL-AGKFQWE 101
KE+ +L D + +T +NRQ Q T+R++ +K ++++ +S++ + + E
Sbjct: 1120 KEMDRLNDKITEITAEKNRQKNEAQ---KTIRVLSEQIKVLEIEQKNLSQNKDSQQVVKE 1176
Query: 100 KLSTRQRRERPLYHLDKFANV-RMYK 26
+ + + R + + HL++ + R Y+
Sbjct: 1177 MIESERERLQQIVHLNELQKLTRKYR 1202
>Z48241-6|CAD44100.2| 410|Caenorhabditis elegans Hypothetical
protein C32A3.3b protein.
Length = 410
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 298 ASLNDRERKELSKLFDAVEIMTTSRNRQPPNVQNMFSTLRLVERVVKKQLKEGQ 137
A+ NDRE +E+ +L AVE + ++++ L VE+ +K + + Q
Sbjct: 52 AAGNDRENEEIMRLSKAVERLEQEKHQRNQQHLKFEEELEQVEKTYRKDIDDLQ 105
>Z48241-5|CAA88286.4| 419|Caenorhabditis elegans Hypothetical
protein C32A3.3a protein.
Length = 419
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 298 ASLNDRERKELSKLFDAVEIMTTSRNRQPPNVQNMFSTLRLVERVVKKQLKEGQ 137
A+ NDRE +E+ +L AVE + ++++ L VE+ +K + + Q
Sbjct: 61 AAGNDRENEEIMRLSKAVERLEQEKHQRNQQHLKFEEELEQVEKTYRKDIDDLQ 114
>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
protein T05C3.2 protein.
Length = 1733
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 301 DASLNDRERKELSKLFDAVEIMTTSRNRQPPNVQNMFSTLRLVERV 164
D SL + ELSKLF + +T R+ P V +F +L L+ R+
Sbjct: 523 DESLKNSSPTELSKLFQHFKKITNLATREKPLV-IIFDSLDLLSRI 567
>AF000198-2|AAB53055.2| 748|Caenorhabditis elegans Hypothetical
protein T28F2.4a protein.
Length = 748
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 226 RNRQPPNVQNMFSTLRLVERVVKKQLKEGQ 137
R +QP N+FST RL E + K L+ G+
Sbjct: 333 RRKQPTYFGNLFSTARLGELLEKNHLEYGR 362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,552
Number of Sequences: 27780
Number of extensions: 248968
Number of successful extensions: 829
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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