Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f15
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 29 0.53
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 29 0.70
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.6
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 28 1.6
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 28 1.6
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 27 2.1
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 27 2.8
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 3.7
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 26 4.9
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -1
Query: 237 GSSSTR*LGTIEKSIES*KTLLDDI*RIAFRFMFWMG 127
GSS+ + +G+IE++ KTL++++ FR +F G
Sbjct: 196 GSSTIKEIGSIEETFTHEKTLMEELLDTVFRLLFCRG 232
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = -3
Query: 406 VKSNNHLVNVSKDVLILLCFLIANFIV 326
++S+ + +++ KDVLI+LC L NFI+
Sbjct: 594 LRSSRNTLDLHKDVLIVLCQLSQNFIL 620
>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 314 NYHQNNEIRNEETQ*DQHVFGN 379
N+H N+ +RNE+TQ H+ N
Sbjct: 93 NHHDNSVLRNEDTQLQPHIVCN 114
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 511 QKVIVHRCNIFTRTAENIYDKCASYNL 431
+ + VHR ++ T NI+ CA Y+L
Sbjct: 136 ESIFVHRFSLATMPLRNIFKNCAHYHL 162
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 601 ANDKCSLKASLDIQ-NRGPNRIVELNEAKCKQKVIVHRCNIFTRTAENIYDKCASYNLRY 425
A+ K SLK ++Q N+ +R + L K KQ + ++ I D C S NLRY
Sbjct: 1260 ADQKLSLKGKQNVQSNKSVDRDM-LKGTKDKQWIEGVSASLMQHFLPCILDSCFSKNLRY 1318
Query: 424 CPFG 413
G
Sbjct: 1319 SMLG 1322
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +2
Query: 128 PIQNINRNAIRYISSNNVFHDSIDFSIVPSHLVDELPICYDCTSPSSSLLNTKIDIAADI 307
P NI R I F + + I + + +PI CT S ++ N K+ + D+
Sbjct: 219 PFDNILRWDINETKKGGPFTEITESDIFVNCIYLSMPIPKFCTVESLNVPNRKLRVVCDV 278
Query: 308 K-DNYHQNNEI 337
D + NN I
Sbjct: 279 SCDTTNPNNPI 289
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +2
Query: 161 YISSNNVFHDSIDFSIVPSHLVDELPICYDCT 256
Y+S +V + ++ ++++ HL++ +PI Y T
Sbjct: 75 YLSQLSVTNQTLFYALISQHLIEMIPIIYTPT 106
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 431 KILPLWPFCQVQQSFGQRFQRRVDLIVFPHCEFHCFD 321
KI + P+ Q +FQR+ I+F H + H D
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVD 1706
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 4.9
Identities = 22/81 (27%), Positives = 33/81 (40%)
Frame = -3
Query: 496 HRCNIFTRTAENIYDKCASYNLRYCPFGRFVKSNNHLVNVSKDVLILLCFLIANFIVLMI 317
H C +F EN+ SY R P G VK + + ++ D L C +I +
Sbjct: 161 HVCMVFEVLGENLLSLIQSYGHRGVPVG-IVKQIAYQLLIALDYLHRECGIIHTDLKPEN 219
Query: 316 IIFNISCDVYFGIKQAATRRS 254
++ I D I+ AT S
Sbjct: 220 VLICIDQDALQHIEAPATTSS 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,843
Number of Sequences: 5004
Number of extensions: 60301
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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