Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f15
         (741 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138878-1|ABA86484.1|  939|Drosophila melanogaster CG17075 prot...    31   1.6  
AE014134-68|AAF51524.1|  968|Drosophila melanogaster CG17075-PA ...    31   1.6  
AF351129-1|AAL83921.1|  549|Drosophila melanogaster FMRFa recept...    29   8.8  
AE014296-529|AAF47700.1|  549|Drosophila melanogaster CG2114-PA ...    29   8.8  

>DQ138878-1|ABA86484.1|  939|Drosophila melanogaster CG17075
           protein.
          Length = 939

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -3

Query: 496 HRCNIFTRTAENIYDKCASYNLRYCPFGRFVKSNNHLVNVSKDVLILLCFLIANFIVLMI 317
           H CNI  RT+ N    C+  N     F    K  NH +     V  L+C + A    L+I
Sbjct: 193 HLCNI--RTSSNRTKHCSVCNKCVGKFDHHCKWLNHCIGSRNYVAFLMCVVSAVVATLVI 250

Query: 316 IIFNISCDVYFGIK 275
           +   ++  V++ I+
Sbjct: 251 VAAVVAQIVFYYIQ 264


>AE014134-68|AAF51524.1|  968|Drosophila melanogaster CG17075-PA
           protein.
          Length = 968

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -3

Query: 496 HRCNIFTRTAENIYDKCASYNLRYCPFGRFVKSNNHLVNVSKDVLILLCFLIANFIVLMI 317
           H CNI  RT+ N    C+  N     F    K  NH +     V  L+C + A    L+I
Sbjct: 200 HLCNI--RTSSNRTKHCSVCNKCVGKFDHHCKWLNHCIGSRNYVAFLMCVVSAVVATLVI 257

Query: 316 IIFNISCDVYFGIK 275
           +   ++  V++ I+
Sbjct: 258 VAAVVAQIVFYYIQ 271


>AF351129-1|AAL83921.1|  549|Drosophila melanogaster FMRFa receptor
           protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 370 DVLILLCFLIANFIVLMIIIFNISCDVYFGIKQAATRR 257
           ++ I  C+LI N+I+  + +  ++C +Y  +K+A   R
Sbjct: 289 NIYIHWCYLIVNYIIPFLTLAILNCLIYRQVKRANRER 326


>AE014296-529|AAF47700.1|  549|Drosophila melanogaster CG2114-PA
           protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 370 DVLILLCFLIANFIVLMIIIFNISCDVYFGIKQAATRR 257
           ++ I  C+LI N+I+  + +  ++C +Y  +K+A   R
Sbjct: 289 NIYIHWCYLIVNYIIPFLTLAILNCLIYRQVKRANRER 326


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,764,415
Number of Sequences: 53049
Number of extensions: 598195
Number of successful extensions: 1219
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)