Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f14
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.16c |spt4||transcription elongation factor complex subu...    83   2e-17
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    30   0.15 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    27   1.1  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   1.4  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   2.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   3.3  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    25   5.8  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   7.6  

>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
           Spt4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 105

 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 40/99 (40%), Positives = 57/99 (57%)
 Frame = -1

Query: 345 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCK 166
           RACL+C ++     F  +GC N           D+V   TS  F+G++A+M+P +SWV +
Sbjct: 10  RACLICGIVLPHSVFANKGCPN--------DGVDDVETFTSPVFEGIMAMMSPTESWVAR 61

Query: 165 WQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRD 49
           WQRI  F  G+YA  V G L   V+  ++ RGI YRPR+
Sbjct: 62  WQRIDTFTPGIYATRVQGVLNEDVVESLRRRGINYRPRN 100


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 234 DCTSNNFDGMIAVMNPEDSWVCKWQRISRFCKGVYAISVSG 112
           D T+ N   M+AV+N  +    +W R S FCKG+Y I   G
Sbjct: 70  DATTQN-PFMLAVVNSNED-ARRWIRRSIFCKGIYEIYCIG 108


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 IHYCNHSIKVITCAIIDIIFVTFHA 264
           ++  + SI VI CA+ D+ + T HA
Sbjct: 609 VNILSSSISVIECAVNDVFYATVHA 633


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 109 PSRNRYCINSFTK---STNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVT 255
           PS+  + +  ++    + ++LPF NP +F   + + S   IT   I ++F T
Sbjct: 399 PSKEVFPLEKYSSEPWNLHNLPFENPCLFNYSFSDLSSLTITRLSIGMVFYT 450


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 52  PWAIGNTSTLH-FSYYTCWQPSRNRYCINSFTKSTN 156
           P ++G++ +L  F  +     + N  C+NSF+KS N
Sbjct: 178 PESVGSSKSLKIFKNFLSLADTPNIQCVNSFSKSAN 213


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = -1

Query: 387 IMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLR---MKSNKDNVYDCTSNN 217
           IM ++    ELRG+    +C L   F  F+Y   D    FL    ++  K ++       
Sbjct: 683 IMWLKINDLELRGIVINSLCKLFTKFSNFDYLFEDRTVTFLTDFIIRKQKAHLSADQCKQ 742

Query: 216 FDGMIAVMNPEDSWVCKWQRISRFCK 139
              ++   +PE   V +  R+S   K
Sbjct: 743 LANVLTQASPEAKTVLEQHRLSEMRK 768


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 417 LAYFLYIRCSIMSIETVPKELRGLRACLVCSLIKTFDQ 304
           L  FL+ R S+ + ET+ K+L      L+  LIK F Q
Sbjct: 286 LQAFLFSRRSVGNRETLRKKLADPPEILIDGLIKRFTQ 323


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 269 NSSQLSQPSYSNWSNVFIKEQTRHARNPR 355
           NSS  S PS + WS   + +   H    R
Sbjct: 251 NSSSTSNPSSAKWSRFTVYDDASHTHQLR 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,072
Number of Sequences: 5004
Number of extensions: 43202
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)