Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f14
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1317 - 25746608-25746703,25747001-25747135 62 2e-10
05_01_0243 - 1806770-1806832,1806942-1807061,1807275-1807457,180... 29 1.4
10_06_0032 + 9844812-9844881,9845759-9845958 29 1.9
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544 28 3.3
03_04_0246 - 19324858-19325159,19325239-19325479,19326420-193265... 28 4.3
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 27 5.7
11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513 27 7.5
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211... 27 7.5
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 27 10.0
>07_03_1317 - 25746608-25746703,25747001-25747135
Length = 76
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = -1
Query: 348 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDG 208
LRACL C L+KT+DQF +GC+NC FL M+ + DNV +CT+ NF G
Sbjct: 31 LRACLRCRLVKTYDQFMEQGCENC-PFLDMERDHDNVVNCTTPNFTG 76
>05_01_0243 -
1806770-1806832,1806942-1807061,1807275-1807457,
1807554-1807693,1807768-1808010,1808664-1808781,
1808902-1808977,1809054-1809120,1809201-1809288,
1809381-1809491,1809632-1809799,1809946-1810040,
1810123-1810162,1810242-1810318,1810607-1810655,
1810756-1810812,1810959-1811048,1811160-1811223,
1812085-1812245
Length = 669
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 207 MIAVMNPEDSWVCKWQRISRFCKGVYA-ISVSGRLPAGVIREMKS 76
++AV+NP + KW S CKG +A I S L +++E++S
Sbjct: 560 LVAVVNPHEENTMKWAE-SNGCKGSFAEICKSEGLKEHILKELQS 603
>10_06_0032 + 9844812-9844881,9845759-9845958
Length = 89
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 165 ICKPSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEEIHHNCHSLHI 299
+CK +C ++ + H + Y C R C F I + H LH+
Sbjct: 45 LCKWNCELVAMKRGGHLTSYECGDRECKCDFCASSIGADEHGLHV 89
>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
Length = 1274
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 390 SIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEF 268
+I+ + +E + R+ LVC+ +K+ + YE D DEF
Sbjct: 44 AILDVIQDAEEKKNHRSGLVCAWLKSLKKVSYEAIDVFDEF 84
>03_04_0246 -
19324858-19325159,19325239-19325479,19326420-19326594,
19326681-19326748,19327248-19327365,19327979-19328007
Length = 310
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 243 YLCY--FSCEEIHHNCHSLHIQIGQMSLSKSRPGMLAT 350
YLCY S E + C+ LH Q+S+S GML T
Sbjct: 147 YLCYTSLSSEPDDYACNGLHRHSKQVSMSALILGMLTT 184
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 327 SLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN--FDGMIAVMNPE 184
SLI ++ Y C ++L S KD++Y C + N +D PE
Sbjct: 200 SLITSWFSGNYSECQLLQDYLNSISPKDHLYACCTGNVFYDAQNYFSTPE 249
>11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513
Length = 404
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +1
Query: 100 CWQPSRNRYCINSFTKSTNSLPFANPAVFRI--HYCNHSIKVITCAIIDIIFV--TFHAK 267
C + + +N+F++ T LP P+ FR+ H C V T +DII + +
Sbjct: 166 CKDAHSHCFLVNAFSRETIQLP--RPSAFRLSHHICKTLPIVNTTGSVDIIIQEHEYSGR 223
Query: 268 KFITIVTAFIFKLVKCLYQRADQ 336
++ +V+ + ++ ++ + ++
Sbjct: 224 IYMAMVSTYFPHILSIMFFQLEE 246
>11_05_0058 +
18719852-18719929,18720032-18720889,18720969-18721118,
18722248-18722496,18722531-18722575,18722576-18722638
Length = 480
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 276 HNCHSL-HIQIGQMSLSKSRPGMLATRVILLAPFLWTLYCTVC 401
H H L H+Q+ + LSK + + APFL +L VC
Sbjct: 322 HRFHCLKHLQLKMIMLSKKYNNLCLVSFLDAAPFLESLIVHVC 364
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 370 GAKRITRVASMPGLLFDKD 314
GAKR+TRV ++PG L + D
Sbjct: 31 GAKRMTRVMTVPGTLSELD 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,315,615
Number of Sequences: 37544
Number of extensions: 246043
Number of successful extensions: 701
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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