Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f14
(468 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099916-1|AAC68775.1| 120|Caenorhabditis elegans Spt transcrip... 148 2e-36
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 34 0.044
AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical ... 33 0.10
U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone... 31 0.31
AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear recep... 31 0.31
U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein. 30 0.72
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 30 0.72
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 30 0.72
AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormo... 30 0.72
Z75554-2|CAA99954.1| 526|Caenorhabditis elegans Hypothetical pr... 30 0.95
Z46787-22|CAO78708.1| 666|Caenorhabditis elegans Hypothetical p... 29 1.3
Z46787-21|CAO78707.1| 714|Caenorhabditis elegans Hypothetical p... 29 1.3
Z46787-20|CAC42257.1| 791|Caenorhabditis elegans Hypothetical p... 29 1.3
Z46787-19|CAO78706.1| 801|Caenorhabditis elegans Hypothetical p... 29 1.3
Z46787-18|CAO78705.1| 805|Caenorhabditis elegans Hypothetical p... 29 1.3
Z46787-17|CAO78704.1| 863|Caenorhabditis elegans Hypothetical p... 29 1.3
Z46787-16|CAO78703.1| 821|Caenorhabditis elegans Hypothetical p... 29 1.3
Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical p... 29 1.3
Z35596-8|CAO78718.1| 666|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z35596-7|CAO78717.1| 714|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z35596-6|CAA84644.2| 791|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z35596-5|CAO78716.1| 801|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z35596-4|CAO78715.1| 805|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z35596-3|CAO78714.1| 863|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z35596-2|CAO78713.1| 821|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical pr... 29 1.3
AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like pot... 29 1.3
Z83233-10|CAB05768.2| 364|Caenorhabditis elegans Hypothetical p... 29 1.7
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p... 29 1.7
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ... 29 1.7
AF273799-1|AAG15148.1| 365|Caenorhabditis elegans nuclear recep... 29 1.7
AF273798-1|AAG15147.1| 366|Caenorhabditis elegans nuclear recep... 29 1.7
Z54281-4|CAA91049.1| 199|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical pr... 29 2.2
U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormon... 29 2.2
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 29 2.2
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 29 2.2
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 29 2.2
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ... 29 2.2
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ... 29 2.2
Z82259-8|CAC70072.3| 410|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81575-10|CAB04640.1| 338|Caenorhabditis elegans Hypothetical p... 28 2.9
AF039037-7|AAC48231.3| 441|Caenorhabditis elegans Nuclear hormo... 28 3.8
Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z50004-1|CAA90291.1| 396|Caenorhabditis elegans Hypothetical pr... 27 5.1
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 27 5.1
AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear recep... 27 5.1
AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear recep... 27 5.1
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 27 5.1
AC006675-12|AAK84548.1| 418|Caenorhabditis elegans Nuclear horm... 27 5.1
Z81496-8|CAB04068.1| 498|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z73899-6|CAA98078.1| 345|Caenorhabditis elegans Hypothetical pr... 27 6.7
AY305844-1|AAR11988.1| 423|Caenorhabditis elegans nuclear recep... 27 6.7
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 27 6.7
AL032626-18|CAA21543.2| 458|Caenorhabditis elegans Hypothetical... 27 6.7
AF273828-1|AAG15177.1| 422|Caenorhabditis elegans nuclear recep... 27 6.7
AF273827-1|AAG15176.1| 421|Caenorhabditis elegans nuclear recep... 27 6.7
AF273826-1|AAG15175.1| 419|Caenorhabditis elegans nuclear recep... 27 6.7
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 27 6.7
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 27 6.7
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 27 6.7
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 27 6.7
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 27 6.7
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 27 6.7
AC024771-7|AAK70663.4| 407|Caenorhabditis elegans Nuclear hormo... 27 6.7
Z93379-5|CAB07593.3| 351|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 27 8.9
U56963-12|AAB38128.1| 341|Caenorhabditis elegans Serpentine rec... 27 8.9
AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein. 27 8.9
AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical ... 27 8.9
AL110500-15|CAD92406.1| 209|Caenorhabditis elegans Hypothetical... 27 8.9
AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear recep... 27 8.9
AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear recep... 27 8.9
AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear recep... 27 8.9
>AF099916-1|AAC68775.1| 120|Caenorhabditis elegans Spt
transcription factor familyprotein 4 protein.
Length = 120
Score = 148 bits (358), Expect = 2e-36
Identities = 63/116 (54%), Positives = 89/116 (76%), Gaps = 2/116 (1%)
Frame = -1
Query: 372 TVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVM 193
+VP +LR LRACL+CSL+K+ + F+ EGC+NC++ L +K +++ VYDCTS N+DGMIA M
Sbjct: 4 SVPADLRNLRACLLCSLVKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAM 63
Query: 192 NPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRP--RDTSQR*K 31
+ +SWVCKWQ++ R KG+YAISVSG LP ++ E+KS G+ Y+P RD S + K
Sbjct: 64 SNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQRDYSTQFK 119
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 34.3 bits (75), Expect = 0.044
Identities = 28/106 (26%), Positives = 40/106 (37%)
Frame = -1
Query: 390 SIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 211
S S E L G +AC+VC F CD C F R + Y C N
Sbjct: 10 SSSSPEMFALNLTGQKACVVCKRPANCYNFGVMSCDACKMFFRRTMLLNVQYVCRRKN-- 67
Query: 210 GMIAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSR 73
+DS+ C R C+ V + V +L + E+K++
Sbjct: 68 -----QCFDDSFSCLKTPYCRACRLVQCVKVGMKLNLSAMLEVKNQ 108
>AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical
protein Y51A2D.5 protein.
Length = 613
Score = 33.1 bits (72), Expect = 0.10
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 127 CINSFTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVTF 258
C N KS +S P A V++ H+C S ++ ++ + +TF
Sbjct: 443 CTNGLDKSNSSFPNATSYVWQKHHCTTSYTILPIVMMGVYLLTF 486
>U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 10 protein.
Length = 395
Score = 31.5 bits (68), Expect = 0.31
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
CLVCS I T + C+ C F R K+ + C
Sbjct: 18 CLVCSDISTGYHYGVPSCNGCKTFFRRTIMKNQTFSC 54
>AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear receptor
NHR-10 protein.
Length = 395
Score = 31.5 bits (68), Expect = 0.31
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
CLVCS I T + C+ C F R K+ + C
Sbjct: 18 CLVCSDISTGYHYGVPSCNGCKTFFRRTIMKNQTFSC 54
>U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein.
Length = 359
Score = 30.3 bits (65), Expect = 0.72
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 226
C+VC T + + C+ C F R +K+ Y CT
Sbjct: 105 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 142
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 30.3 bits (65), Expect = 0.72
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 226
C+VC T + + C+ C F R +K+ Y CT
Sbjct: 220 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 257
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 30.3 bits (65), Expect = 0.72
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 226
C+VC T + + C+ C F R +K+ Y CT
Sbjct: 216 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 253
>AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 2 protein.
Length = 359
Score = 30.3 bits (65), Expect = 0.72
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 226
C+VC T + + C+ C F R +K+ Y CT
Sbjct: 105 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 142
>Z75554-2|CAA99954.1| 526|Caenorhabditis elegans Hypothetical
protein ZC455.3 protein.
Length = 526
Score = 29.9 bits (64), Expect = 0.95
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 139 FTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVTFHAKKFITIVTAFIFKL 306
F + N P+AN F YC S+ ++ C I + V F F +V + I KL
Sbjct: 468 FAQVDNLEPYANKYNFIEFYCLDSLALVVCTISVVALVMFKILSF--VVNSVIEKL 521
>Z46787-22|CAO78708.1| 666|Caenorhabditis elegans Hypothetical
protein C30D11.1h protein.
Length = 666
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z46787-21|CAO78707.1| 714|Caenorhabditis elegans Hypothetical
protein C30D11.1g protein.
Length = 714
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z46787-20|CAC42257.1| 791|Caenorhabditis elegans Hypothetical
protein C30D11.1f protein.
Length = 791
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z46787-19|CAO78706.1| 801|Caenorhabditis elegans Hypothetical
protein C30D11.1e protein.
Length = 801
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 250 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 307
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 308 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 339
>Z46787-18|CAO78705.1| 805|Caenorhabditis elegans Hypothetical
protein C30D11.1d protein.
Length = 805
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 254 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 311
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 312 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 343
>Z46787-17|CAO78704.1| 863|Caenorhabditis elegans Hypothetical
protein C30D11.1c protein.
Length = 863
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 312 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 369
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 370 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 401
>Z46787-16|CAO78703.1| 821|Caenorhabditis elegans Hypothetical
protein C30D11.1b protein.
Length = 821
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 270 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 327
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 328 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 359
>Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 278 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 335
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 336 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 367
>Z35596-8|CAO78718.1| 666|Caenorhabditis elegans Hypothetical
protein C30D11.1h protein.
Length = 666
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z35596-7|CAO78717.1| 714|Caenorhabditis elegans Hypothetical
protein C30D11.1g protein.
Length = 714
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z35596-6|CAA84644.2| 791|Caenorhabditis elegans Hypothetical
protein C30D11.1f protein.
Length = 791
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z35596-5|CAO78716.1| 801|Caenorhabditis elegans Hypothetical
protein C30D11.1e protein.
Length = 801
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 250 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 307
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 308 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 339
>Z35596-4|CAO78715.1| 805|Caenorhabditis elegans Hypothetical
protein C30D11.1d protein.
Length = 805
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 254 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 311
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 312 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 343
>Z35596-3|CAO78714.1| 863|Caenorhabditis elegans Hypothetical
protein C30D11.1c protein.
Length = 863
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 312 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 369
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 370 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 401
>Z35596-2|CAO78713.1| 821|Caenorhabditis elegans Hypothetical
protein C30D11.1b protein.
Length = 821
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 270 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 327
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 328 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 359
>Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 278 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 335
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 336 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 367
>AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like
potassium channel protein.
Length = 791
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 40 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 213
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 214 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z83233-10|CAB05768.2| 364|Caenorhabditis elegans Hypothetical
protein K06B4.11 protein.
Length = 364
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 220
CL+C + F C C F R + V+DC N
Sbjct: 23 CLICCEVADGHHFGAAACRACAAFFRRTVQLNKVHDCPKN 62
>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = -1
Query: 300 EYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQRISRFCKGVYAIS 121
E++G DN + KS + + S DG M + + + Y I
Sbjct: 1075 EFQGIDNAMKISEEKSEQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQ 1134
Query: 120 VSGRLPAGVIREMKSR 73
G + +G I EM++R
Sbjct: 1135 SEGEIMSGCIIEMRNR 1150
>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = -1
Query: 300 EYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQRISRFCKGVYAIS 121
E++G DN + KS + + S DG M + + + Y I
Sbjct: 1075 EFQGIDNAMKISEEKSEQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQ 1134
Query: 120 VSGRLPAGVIREMKSR 73
G + +G I EM++R
Sbjct: 1135 SEGEIMSGCIIEMRNR 1150
>AF273799-1|AAG15148.1| 365|Caenorhabditis elegans nuclear receptor
NHR-53 protein.
Length = 365
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 220
CL+C + F C C F R + V+DC N
Sbjct: 24 CLICCEVADGHHFGAAACRACAAFFRRTVQLNKVHDCPKN 63
>AF273798-1|AAG15147.1| 366|Caenorhabditis elegans nuclear receptor
NHR-53 protein.
Length = 366
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 220
CL+C + F C C F R + V+DC N
Sbjct: 25 CLICCEVADGHHFGAAACRACAAFFRRTVQLNKVHDCPKN 64
>Z54281-4|CAA91049.1| 199|Caenorhabditis elegans Hypothetical
protein F46C5.7 protein.
Length = 199
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 148 STNSLPFANPAVFRIHYCN--HSIKVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 309
+++ +PF F ++ C SI ++ CA ++IF F+ I+ +F+F L+
Sbjct: 19 NSSFMPFWRRTAF-VYKCELAFSILILFCAFAELIFYDCFVIFFLMIIASFVFVLL 73
>Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical
protein C43C3.2 protein.
Length = 498
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +1
Query: 208 SIKVITCAIIDIIFVTFHAKKFITIVTAFIFKLVKCLYQRADQACSQPA*FFWHRFYGHY 387
+I V AI + +FH + + ++ L + LYQ S P F + YG +
Sbjct: 313 TIPVGHIAIYTLAICSFHFICWTPYWISILYSLYEELYQDTKSTASPPTYAFIYFMYGVH 372
Query: 388 TAPYV 402
PY+
Sbjct: 373 ALPYI 377
>U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 78 protein.
Length = 387
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/58 (27%), Positives = 20/58 (34%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCK 166
C +C + F C C F R D YDC + D +N E CK
Sbjct: 3 CAICDSVALSLHFGAPSCKACAAFFRRTVALDITYDCITGTLD---CEVNFERRMACK 57
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 211
CL+CS T FE + C C F R + C + D
Sbjct: 12 CLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCITGRDD 54
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 211
CL+CS T FE + C C F R + C + D
Sbjct: 30 CLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCITGRDD 72
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 211
CL+CS T FE + C C F R + C + D
Sbjct: 12 CLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCITGRDD 54
>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
protein C09H5.2b protein.
Length = 1039
Score = 28.7 bits (61), Expect = 2.2
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = -1
Query: 393 CSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCD----NCDEFLRMKSN----KDNV 238
CS ++I+ VP EL G R + + ++ F EGC C +F ++ K N
Sbjct: 559 CSTINIDGVPMELNGKR---MDDFNEAYETFGDEGCRVIGFACKKFRAPATSTFSIKSNT 615
Query: 237 YDCTSNNFDGMIAVMNP 187
+ +F GM A+M+P
Sbjct: 616 IPMDNWDFLGMSAIMDP 632
>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
protein C09H5.2a protein.
Length = 1054
Score = 28.7 bits (61), Expect = 2.2
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = -1
Query: 393 CSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCD----NCDEFLRMKSN----KDNV 238
CS ++I+ VP EL G R + + ++ F EGC C +F ++ K N
Sbjct: 559 CSTINIDGVPMELNGKR---MDDFNEAYETFGDEGCRVIGFACKKFRAPATSTFSIKSNT 615
Query: 237 YDCTSNNFDGMIAVMNP 187
+ +F GM A+M+P
Sbjct: 616 IPMDNWDFLGMSAIMDP 632
>Z82259-8|CAC70072.3| 410|Caenorhabditis elegans Hypothetical
protein C28D4.9 protein.
Length = 410
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -1
Query: 345 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 220
R CLVC K + C+ C F R + Y C +N
Sbjct: 13 RRCLVCGDDKASRHYGTVACNGCKGFFRRSVWEKRTYFCIAN 54
>Z81575-10|CAB04640.1| 338|Caenorhabditis elegans Hypothetical
protein R08H2.13 protein.
Length = 338
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 58 AIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFAN 174
++ N + + Y C++P YCI SF K S+ N
Sbjct: 286 SLANVVPIAVAIYPCFEPLAAMYCIKSFQKRIFSILTCN 324
>AF039037-7|AAC48231.3| 441|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 204 protein.
Length = 441
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 342 ACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
AC VC T ++ C+ C F R + + Y C++ N
Sbjct: 50 ACQVCYGKATGHHYDVASCNGCKSFFRRVTIEKLKYRCSAGN 91
>Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical
protein F57A10.5 protein.
Length = 443
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/37 (24%), Positives = 15/37 (40%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
CL+C ++ C+ C F R D ++C
Sbjct: 47 CLICGNSANGHHYDVASCNGCKTFFRRMCVSDRSFEC 83
>Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical
protein ZK662.3b protein.
Length = 817
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -1
Query: 345 RACLVCSLIKTFD-QFEYEGCDNCDEFLRMKSNKDNVYDCTSN 220
+ C VC K F F C++C F R +NK+ C N
Sbjct: 98 KVCRVCG-DKAFSYNFNVITCESCKAFFRRNANKEKEIRCPFN 139
>Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical
protein ZK662.3a protein.
Length = 780
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -1
Query: 345 RACLVCSLIKTFD-QFEYEGCDNCDEFLRMKSNKDNVYDCTSN 220
+ C VC K F F C++C F R +NK+ C N
Sbjct: 98 KVCRVCG-DKAFSYNFNVITCESCKAFFRRNANKEKEIRCPFN 139
>Z50004-1|CAA90291.1| 396|Caenorhabditis elegans Hypothetical
protein C02B4.2 protein.
Length = 396
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/40 (25%), Positives = 17/40 (42%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 220
C VC + + + C+ C F R ++ Y C +N
Sbjct: 31 CSVCGDVASGIHYSVAACNGCKTFFRRVVLENRTYSCKNN 70
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/41 (29%), Positives = 14/41 (34%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
C +C F E C C F R + Y C NN
Sbjct: 14 CAICQESAEGFHFGAEACRACAAFFRRTVSNRKTYSCQGNN 54
>AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 817
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -1
Query: 345 RACLVCSLIKTFD-QFEYEGCDNCDEFLRMKSNKDNVYDCTSN 220
+ C VC K F F C++C F R +NK+ C N
Sbjct: 98 KVCRVCG-DKAFSYNFNVITCESCKAFFRRNANKEKEIRCPFN 139
>AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear receptor
NHR-60 protein.
Length = 442
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/37 (24%), Positives = 15/37 (40%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
CL+C ++ C+ C F R D ++C
Sbjct: 46 CLICGNSANGHHYDVASCNGCKTFFRRMCVSDRSFEC 82
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/41 (29%), Positives = 14/41 (34%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
C +C F E C C F R + Y C NN
Sbjct: 14 CAICQESAEGFHFGAEACRACAAFFRRTVSNRKTYSCQGNN 54
>AC006675-12|AAK84548.1| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 99 protein.
Length = 418
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/58 (25%), Positives = 22/58 (37%)
Frame = -1
Query: 390 SIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
S+ S+++ R +R C +C F C C F R N+ C NN
Sbjct: 9 SLSSLDSPLVPTRSMRTCEICDKPSHGKHFGAVTCRACAMFFRRFGRCKNMKPCEMNN 66
>Z81496-8|CAB04068.1| 498|Caenorhabditis elegans Hypothetical
protein F09C6.8 protein.
Length = 498
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/89 (22%), Positives = 34/89 (38%)
Frame = -1
Query: 375 ETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAV 196
E P R C VC D++ C C F R K+ Y C + +I+
Sbjct: 24 EPSPSSKRPTENCKVCGDRPNNDRYGASACLGCTVFFRRAVVKNLKYKCMKEQ-NCLISC 82
Query: 195 MNPEDSWVCKWQRISRFCKGVYAISVSGR 109
C++Q+ F G+++ ++ R
Sbjct: 83 TYRNACRYCRFQKC--FAVGMHSSAIQRR 109
>Z73899-6|CAA98078.1| 345|Caenorhabditis elegans Hypothetical
protein ZK829.8 protein.
Length = 345
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 458 FCVMQFILNVMFIV*LIF 405
FCV+ FI N++F+V L F
Sbjct: 15 FCVLSFIFNILFLVLLKF 32
>AY305844-1|AAR11988.1| 423|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 423
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
C +C F E C C F R + D Y C NN
Sbjct: 40 CSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNN 80
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -1
Query: 354 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
R + AC +C T F + C C F R + Y C
Sbjct: 151 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 192
>AL032626-18|CAA21543.2| 458|Caenorhabditis elegans Hypothetical
protein Y37D8A.22 protein.
Length = 458
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 394 VQYNVHRNGAKRITRVASMPGLLFD 320
V++N+HR G I AS+P LFD
Sbjct: 263 VEHNIHRLGFPGILLFASIPNPLFD 287
>AF273828-1|AAG15177.1| 422|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 422
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
C +C F E C C F R + D Y C NN
Sbjct: 39 CSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNN 79
>AF273827-1|AAG15176.1| 421|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 421
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
C +C F E C C F R + D Y C NN
Sbjct: 38 CSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNN 78
>AF273826-1|AAG15175.1| 419|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 419
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
C +C F E C C F R + D Y C NN
Sbjct: 36 CSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNN 76
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -1
Query: 354 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
R + AC +C T F + C C F R + Y C
Sbjct: 155 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 196
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -1
Query: 354 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
R + AC +C T F + C C F R + Y C
Sbjct: 150 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 191
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -1
Query: 354 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
R + AC +C T F + C C F R + Y C
Sbjct: 57 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 98
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -1
Query: 354 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
R + AC +C T F + C C F R + Y C
Sbjct: 108 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 149
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -1
Query: 354 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
R + AC +C T F + C C F R + Y C
Sbjct: 190 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 231
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -1
Query: 354 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 229
R + AC +C T F + C C F R + Y C
Sbjct: 264 RAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSC 305
>AC024771-7|AAK70663.4| 407|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 86 protein.
Length = 407
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = -1
Query: 339 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
C +C F E C C F R + D Y C NN
Sbjct: 24 CSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNN 64
>Z93379-5|CAB07593.3| 351|Caenorhabditis elegans Hypothetical
protein F21H7.7 protein.
Length = 351
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 429 NVYCLAYFLYIR-CSIMSIETVPKELRGLRACLV-CSL 322
+++CL Y+LYI +S+ET + R L +V CS+
Sbjct: 231 HIFCLIYYLYISPPKTLSVETKQSQKRFLIGMMVQCSI 268
>Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical
protein K05D4.2 protein.
Length = 338
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 58 AIGNTSTLHFSYYTCWQPSRNRYCINSFTK 147
AI N S Y C++P YCI F K
Sbjct: 285 AIANLVMTSVSIYPCFEPLVAMYCIKRFRK 314
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 26.6 bits (56), Expect = 8.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 165 ICKPSCLQDSLLQSFHQSYY 224
+C CL S+L+ FH YY
Sbjct: 213 VCFACCLSKSILKDFHDFYY 232
>U56963-12|AAB38128.1| 341|Caenorhabditis elegans Serpentine
receptor, class v protein33 protein.
Length = 341
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 468 DFFFLCNAIYFECNVY-CLAYFLYIRCS 388
+FFF + Y Y + YFLYIRC+
Sbjct: 83 EFFFNYQSFYIAAASYNSIYYFLYIRCT 110
>AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein.
Length = 474
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 17/43 (39%)
Frame = -1
Query: 345 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
+ C VC T + C+ C F + VY C+ +N
Sbjct: 98 KLCSVCGDKSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDN 140
>AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical
protein Y15E3A.1a protein.
Length = 474
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 17/43 (39%)
Frame = -1
Query: 345 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
+ C VC T + C+ C F + VY C+ +N
Sbjct: 98 KLCSVCGDKSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDN 140
>AL110500-15|CAD92406.1| 209|Caenorhabditis elegans Hypothetical
protein Y87G2A.15 protein.
Length = 209
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -1
Query: 435 ECNVYCLAYFLYIRCSI-MSIETVPKELRG 349
E V CL FLY C I S+ V EL G
Sbjct: 3 EVTVICLLVFLYSTCQIAFSVPIVVSELNG 32
>AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 476
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 17/43 (39%)
Frame = -1
Query: 345 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
+ C VC T + C+ C F + VY C+ +N
Sbjct: 100 KLCSVCGDKSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDN 142
>AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 17/43 (39%)
Frame = -1
Query: 345 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
+ C VC T + C+ C F + VY C+ +N
Sbjct: 99 KLCSVCGDKSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDN 141
>AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 17/43 (39%)
Frame = -1
Query: 345 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 217
+ C VC T + C+ C F + VY C+ +N
Sbjct: 99 KLCSVCGDKSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDN 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,495,237
Number of Sequences: 27780
Number of extensions: 249542
Number of successful extensions: 956
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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