Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f12
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 28 1.4
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 28 1.9
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 28 1.9
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.5
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.5
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c... 27 4.3
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 26 5.7
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 26 5.7
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 26 5.7
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 26 7.6
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 7.6
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 7.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 7.6
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 26 7.6
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 26 7.6
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 26 7.6
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 320 IHVLGAILAGRQERGPVYCSPLQLLTRFFVLSLASPRGSLRRRN 451
+HV+ L+ + R P+ SP L R F S S +RRN
Sbjct: 232 LHVISDTLSSPRRRNPLLSSPKTPLRRSFSKSKVRNSNSTKRRN 275
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = -3
Query: 673 YVPKPSVLRESFKPAHKYHCVEQPFENRTVNRMSFLDPGRVPLPESYAPVKCYEKPTAKM 494
Y P V +F P H + + + VNR +FL P P + P + + ++
Sbjct: 142 YYPNMYVSANTFIPMPYAHYTDNMYHAKPVNRPNFLPREGTPPPFAQQPAEQFSPFNSEY 201
Query: 493 ES 488
ES
Sbjct: 202 ES 203
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = -3
Query: 727 HDMWGQGPMQNITTQRHDYVPKPSV----LRESFKPAHKY 620
HD+W + ++ DY P P + ES+ P +Y
Sbjct: 263 HDLWADDDQATVNQRKLDYAPAPKLPPPSHEESYNPPEEY 302
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -3
Query: 583 NRMSFLDPGRVPLPESYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQRPP 428
++M+ G PLP S P P + S H M+F P VPT PP
Sbjct: 290 HKMNVPPMGMYPLPFSPLPSAAPPIPFSPNVSSHPH-MAFLPATVPTHSAPP 340
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 816 RQLKWKGTR-CKSCRTYRTRCA*RSRSGPATTTCGVRVPC 700
R + + TR C +CR ++RC S P +++PC
Sbjct: 15 RPYRSRKTRPCDNCRLRKSRCVVESIGNPCLLCTQLKIPC 54
>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 50
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -3
Query: 331 EYMDPCAYGDCKPCDCTCPSGCIK-TDPCACDYPKAGCCS*AS 206
E+ C KPCDC GC + C C C +S
Sbjct: 2 EHTTQCKSKQGKPCDCQSKCGCQDCKESCGCKSSAVDNCKCSS 44
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 174 NTVLPMFKKMADAHEQQPAFG*SQAQGSVLIHPE 275
N +P ++ HEQ P + G L+HPE
Sbjct: 386 NDYVPHYRSFYQQHEQNPVLFSLYSVGYKLVHPE 419
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 607 QPFENRTVNRMSFLDPGRVPLPESYAPVKCYEKPTAKMESD 485
Q + R++F D G P S A + YEK + + D
Sbjct: 398 QVLRRQVEERLNFFDTGVAPTRNSIAMAEAYEKALSSVNID 438
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 396 VKSWRGLQYTGPRSCLPARIAPSTWIPALMAIANL-VTALALQDVLKRIPVPAITRKRVV 220
+KSW L+ G CL + + + A + N+ + L LQ I + A+ + V
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ--YNEIELDAVRTLKTV 297
Query: 219 VRERQP 202
+ E+ P
Sbjct: 298 IDEKMP 303
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = -3
Query: 574 SFLDPGRVPLPESYAPVKCYEKPTAKMESDTIHKMSFQPVCVP 446
S+ P P P S P++ +PT S++ + P VP
Sbjct: 3 SYALPSMQPTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVP 45
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +1
Query: 214 TNNNPLSGNRRHRDPF*YILKGKCSHKVCNRHKRRDPCTRCNPRREARTRTG 369
T +N G+ R +P+ L H N H +RD R RRE G
Sbjct: 143 TRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRD--DRYERRREHSPNDG 192
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/40 (25%), Positives = 16/40 (40%)
Frame = -1
Query: 570 FWTRDECPYRNRMLPSSVTKSQQPKWRATRYIRCPSSLYV 451
FW+++EC Y + S S W + C Y+
Sbjct: 947 FWSKNECKYVKSNITFSANDSANYNWNYVDQLICGFETYL 986
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 7.6
Identities = 23/92 (25%), Positives = 35/92 (38%)
Frame = -3
Query: 613 VEQPFENRTVNRMSFLDPGRVPLPESYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQR 434
+ P N + F +P V P +PT + S+ + + P +
Sbjct: 367 LNDPKPNLPETEVDFGEPLEVEAPSFVVQNNSAVQPTTQKTSEDSTDLHTNEI--PNVAQ 424
Query: 433 PPWACKGQYEKPCQKLEGTTIYRSSFLPPGED 338
PP + + + K KLE I SS L P ED
Sbjct: 425 PPSSFEKENNKDTSKLENPDI-SSSPLSPTED 455
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = -3
Query: 664 KPSVLRESFK---PAHKYHCVEQPFENR 590
KPS+L S PAH +CV FE R
Sbjct: 342 KPSILHSSLSSLLPAHPIYCVPFGFEER 369
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -1
Query: 519 VTKSQQPKWRATRYIRCPSSLYVFRRLNDPRGLARDNTKNRVKSWRGL 376
+ K + KW A +S+ V+ + + A NTKN+ K W L
Sbjct: 260 IKKVSEIKWEALVKSPANNSVNVYAK-DSNHSSASGNTKNKAKDWDSL 306
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 634 PAHKYHCVEQPFE-NRTVNRMSFLDPGRVPLPESYAPVKCYEKPTAKMESDT 482
PAHK+ V QP E NR+++ +P P+S +P KP+ + S T
Sbjct: 515 PAHKHSAVLQPLEVNRSIS---------IPPPKSISP-SILHKPSLESASST 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,849,606
Number of Sequences: 5004
Number of extensions: 91102
Number of successful extensions: 289
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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