Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f12
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.21
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 33 0.21
12_01_0288 - 2160981-2161076,2161150-2161236,2161333-2161419,216... 32 0.65
09_04_0225 - 15855544-15855727,15855796-15856406 31 1.5
05_06_0232 + 26596478-26596480,26596492-26596574,26596813-265969... 30 2.6
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 3.5
11_03_0128 - 10437407-10438049,10438097-10438272 29 6.0
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 29 6.0
09_03_0040 + 11816056-11819069,11819837-11820428 28 8.0
03_02_0822 + 11530250-11530442,11530728-11531129,11531430-115318... 28 8.0
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 33.5 bits (73), Expect = 0.21
Identities = 23/72 (31%), Positives = 26/72 (36%)
Frame = -3
Query: 448 PTPQRPPWACKGQYEKPCQKLEGTTIYRSSFLPPGEDCTEYMDPCAYGDCKPCDCTCPSG 269
P PQ PP CK PC+K + E PC KPC C P
Sbjct: 81 PLPQPPP-PCK---PPPCEKPPEDCKPKPCHCCSCEKPKPKPKPCHCEKPKPCHCEKPKP 136
Query: 268 CIKTDPCACDYP 233
C K PC + P
Sbjct: 137 CEKPPPCKPEEP 148
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = -3
Query: 304 DCKP--CDC-TCPSGCIKTDPCACDYPKAGCC 218
DCKP C C +C K PC C+ PK C
Sbjct: 100 DCKPKPCHCCSCEKPKPKPKPCHCEKPKPCHC 131
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 33.5 bits (73), Expect = 0.21
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
Frame = -3
Query: 586 VNRMSFLDP--GRVPLPESYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQRPPWACKG 413
+N F+D GRVP+ +A A+ + D+ +S VCV + P + C
Sbjct: 122 MNSSQFIDTNGGRVPMVVDWAVQNASNCVEAQKDHDSYACISSNSVCVNSSSGPGYICN- 180
Query: 412 QYEKPCQKLEGTTIYRSSFLPPGEDCTEYMDPCAYGDCK----PCDCTCPSG 269
C Y ++C E+ + YG CK +C+CP+G
Sbjct: 181 -----CTHGYQGNPYLLHGCQDIDECEEHENYHCYGTCKNILGSFECSCPAG 227
>12_01_0288 -
2160981-2161076,2161150-2161236,2161333-2161419,
2161641-2161726,2161805-2161908,2162618-2162704,
2162790-2162913,2163058-2163176,2163268-2163397,
2163583-2163671,2163804-2163892,2164579-2164672,
2164778-2164857,2164952-2165041,2166307-2166393,
2166495-2166539,2166966-2167042,2167120-2167225,
2167383-2167464,2167553-2167624,2168106-2168183,
2168259-2168349,2168826-2168979
Length = 717
Score = 31.9 bits (69), Expect = 0.65
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = -1
Query: 513 KSQQPKWRATRYIRCPSSLYVFRRLNDPRGLARDNTKNRVKSWRGLQYTGPRSCLPARIA 334
K Q KW R + P L N G DN V+++R +Y G R C+ +
Sbjct: 72 KLQTGKWNVYRSAKSPLKLINRFPDNPDIGTLHDNFVYAVETFRDCRYLGTRVCVDGTVG 131
Query: 333 PSTWI 319
W+
Sbjct: 132 DYKWM 136
>09_04_0225 - 15855544-15855727,15855796-15856406
Length = 264
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 795 TRCKSCRTYRTRCA*RSRSG-PATTTCG 715
TRC+SC + T C SR+G P T T G
Sbjct: 178 TRCRSCTAWATSCPGTSRAGCPPTRTSG 205
>05_06_0232 +
26596478-26596480,26596492-26596574,26596813-26596934,
26597447-26597611,26597816-26597909,26598001-26598208
Length = 224
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 5 NLPNLEIIIIRKYN*NYVGRIHNLKLLFLQFVK 103
N+PN E+ II + N Y G LK L F+K
Sbjct: 179 NIPNHELHIIAEANHRYTGHEKELKAFVLDFIK 211
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 749 AVDPALPPRHVGSGSHAEHHHA 684
A+ PA PP+ + +H+ HHHA
Sbjct: 169 AISPATPPQLSPANAHSTHHHA 190
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 750 RSRSGPATTTCGVRVPCRTSPRNDTTTCP--SRLYSGSRSNRLTSTT 616
RSRS +T++ R CR +P N T+ C SR S + + R++ T+
Sbjct: 131 RSRSTASTSSTTCRTCCRATP-NSTSPCKTGSRCSSSTTARRISITS 176
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 340 DCTEYMDPCAYGDCKPCDCTCPSGCIKTDPCACDYPKAGCCS 215
D + +D K C+ TCP+ I D D GCCS
Sbjct: 139 DIYQVLDQSGNVPAKLCNVTCPNRGITEDIARQDCNGTGCCS 180
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 334 TEYMDPCAYGD--CKPCDCTCPSGCIKTDPCACDYPKAG 224
TE + P +Y K CDCT +GC ++ CAC G
Sbjct: 944 TEVIYPHSYAKEPLKGCDCT--NGCSDSNRCACAVKNGG 980
>03_02_0822 +
11530250-11530442,11530728-11531129,11531430-11531878,
11533568-11533744
Length = 406
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 298 KPCDCTCPSGCIKTDPCAC 242
K C C C S C+ D C+C
Sbjct: 235 KMCVCKCTSSCLGEDNCSC 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,995,240
Number of Sequences: 37544
Number of extensions: 664086
Number of successful extensions: 2142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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