Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f12
(834 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical ... 35 0.062
AL021503-6|CAA16424.2| 459|Caenorhabditis elegans Hypothetical ... 33 0.19
U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical p... 32 0.58
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 32 0.58
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 31 1.0
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 31 1.3
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 31 1.3
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 31 1.3
Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical pr... 29 3.1
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 29 3.1
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 29 3.1
AC006772-3|AAF60608.1| 85|Caenorhabditis elegans Hypothetical ... 29 3.1
U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile (un... 29 4.1
AL161712-8|CAC70133.1| 340|Caenorhabditis elegans Hypothetical ... 29 4.1
Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical pr... 29 5.4
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 29 5.4
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr... 29 5.4
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z93393-15|CAE54926.1| 347|Caenorhabditis elegans Hypothetical p... 28 9.5
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 9.5
AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical... 28 9.5
>AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical
protein Y59E9AL.5 protein.
Length = 99
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 316 CAYGDCKPCDCTCPSGCIKTDPCACDYPKAGCCS 215
C DC C CT S C + PC +GCCS
Sbjct: 68 CVQDDCTTCSCTSASRCSRCSPCC-----SGCCS 96
>AL021503-6|CAA16424.2| 459|Caenorhabditis elegans Hypothetical
protein Y68A4A.10a protein.
Length = 459
Score = 33.5 bits (73), Expect = 0.19
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Frame = -3
Query: 538 SYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQRPPWACKGQYEKPCQKLEGTTIYRSS 359
S AP C T +D MS + C TP P C K C G +
Sbjct: 184 SIAPQSCLPCQTCASFTDP---MSEKATCTATPGMTPGDCATLAVK-CMINAGFECNDVA 239
Query: 358 FLPPGEDCTEYMDPCA-YGDCKPCDCTCPSGC 266
+PP + CT + DP + G C +GC
Sbjct: 240 LIPPCQTCTPFTDPMSDKGTCTATTGMTSTGC 271
>U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical
protein C25E10.10 protein.
Length = 169
Score = 31.9 bits (69), Expect = 0.58
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 559 GRVPLPESYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQRPPWACKGQYE-KPC 395
G + P++Y +C E P + +E + S P CVP P R P C+G E K C
Sbjct: 36 GSIKCPDNY---RC-ELPVSDLECGSEDDCSVDPKCVPIPIRKP-ECEGDEELKAC 86
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 31.9 bits (69), Expect = 0.58
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -3
Query: 397 CQKLEGTTIYRSSF--LPPG-EDCTEYMDPCAYGDCKPCDCT-CPS 272
CQK G ++ S + LP G +D + Y +PC YG P C CPS
Sbjct: 126 CQKC-GINVHESCYGTLPGGSDDASWYCEPCLYGLTLPPHCEFCPS 170
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 709 PDPTCR-GGRAGSTASRT--PGSVGTTTFAPCPLP 804
P P+ GGR GST T PGSV T + P P P
Sbjct: 215 PSPSVTPGGRPGSTPPATFPPGSVSTVRYTPGPTP 249
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -3
Query: 436 RPPWACKGQYEKPCQKLEGTTIYRSSFLPPGEDCTEYMDPCAYGDCKPCDCTCPSGCIKT 257
R P C + + C ++ G + + G C P +G C+CP+G I+
Sbjct: 718 RFPCKCARENSEGCDEITGKCRCKPGYY--GHHCKRMCSPGLFGAGCAMKCSCPAG-IRC 774
Query: 256 DPCACDYPK 230
DP D K
Sbjct: 775 DPVTGDCTK 783
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -3
Query: 436 RPPWACKGQYEKPCQKLEGTTIYRSSFLPPGEDCTEYMDPCAYGDCKPCDCTCPSGCIKT 257
R P C + + C ++ G + + G C P +G C+CP+G I+
Sbjct: 718 RFPCKCARENSEGCDEITGKCRCKPGYY--GHHCKRMCSPGLFGAGCAMKCSCPAG-IRC 774
Query: 256 DPCACDYPK 230
DP D K
Sbjct: 775 DPVTGDCTK 783
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 709 PDPTCR-GGRAGSTASRT--PGSVGTTTFAPCPLP 804
P P+ GGR GST T PGS+ T + P P P
Sbjct: 138 PSPSVTPGGRPGSTPPATFPPGSISTVRYTPGPTP 172
>Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical
protein F15D3.2 protein.
Length = 376
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -3
Query: 808 QMEGDTVQKLSYLPNPVCVTQSIRPCHHDMWGQGPMQNITTQRHDYVPKPSVLRESFKPA 629
Q +G +Q ++ LP + Q+ CHH + + ++HD+V + F+P
Sbjct: 228 QPKGTCIQPVT-LPASWSIAQA--SCHHKGNNGHLVNEYSREKHDFVMAILKTYKEFQPT 284
Query: 628 HKYH 617
+KYH
Sbjct: 285 YKYH 288
>Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical
protein F21C3.2 protein.
Length = 813
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Frame = -1
Query: 786 KSCRTYRTRCA*RSRSG-----PATTTCGVRVPCRTSPRNDTTTCPSRLYSGSRSNRLTS 622
+ C T CA SRSG P + R C+ R+ TC + S SN T
Sbjct: 634 EECSDRHTNCAMWSRSGECNKNPLWMSENCRSSCQKCGRSRAATCGGGGGADSISNPTTM 693
Query: 621 TTASNNRLKIGP*IGCRFWTRDEC 550
A+NN + P + D+C
Sbjct: 694 PPATNNGQQNTPCDSPMCYNEDQC 717
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 343 EDCTEYMDPC-AYGDCKPCDCTCPSGCIKTDPCACD 239
+DCT +D A G+C+P TC G + C D
Sbjct: 22 QDCTNALDGLYALGECEPQFLTCSGGIARIMDCPAD 57
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 343 EDCTEYMDPC-AYGDCKPCDCTCPSGCIKTDPCACD 239
+DCT +D A G+C+P TC G + C D
Sbjct: 22 QDCTNALDGLYALGECEPQFLTCSGGIARIMDCPAD 57
>AC006772-3|AAF60608.1| 85|Caenorhabditis elegans Hypothetical
protein Y46D2A.3 protein.
Length = 85
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = -3
Query: 310 YGDCKPCDCTCPSGCIKTDPCA---CDYPKAGCC 218
Y C P C C + PCA C +P+ CC
Sbjct: 35 YRICYPIRCKCSGPTKRKAPCANRPCPFPRTTCC 68
>U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile
(unfertilizable) protein1 protein.
Length = 551
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = -3
Query: 421 CKGQYEKPCQKLEGTTIYRSSFLPPGEDCTEYMDPCAYGDCKPCDCTCPSGCIKTDPCAC 242
C G + C +GT I R+ +DCT+ MD DC P CT S K C
Sbjct: 292 CSGTDKALCD--DGTCIMRTQVCDGKKDCTDGMDE---EDC-PGSCTIESFSPKLKMVTC 345
Query: 241 ----DYPKAGCCS 215
Y +A CS
Sbjct: 346 SDGKQYTEAEACS 358
>AL161712-8|CAC70133.1| 340|Caenorhabditis elegans Hypothetical
protein Y66D12A.11 protein.
Length = 340
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 577 MSFLDPGRVPL-PESYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQRPP 428
MS L+P V + PES+ ++ + P S+ ++ QP VP P+ P
Sbjct: 195 MSELEPEGVEVTPESFPDLQIMKPPPVSPPSNISEQIHHQPPLVPQPESRP 245
>Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical
protein T23F6.1 protein.
Length = 160
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = -3
Query: 301 CKPCDCTCPSGCIKTDPCACDYPKAGC 221
CK C C + C C+C + GC
Sbjct: 111 CKCCQPVCTNACTNGGGCSCGCTRGGC 137
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Frame = -3
Query: 454 CVPTPQRPPWACKGQYEKP-CQKLEGTTIYRSSFLPPGEDCTE-YMDPCAYGDCKPCDCT 281
C P Q+P C + P CQ+ + P DC +PC + T
Sbjct: 192 CAPVQQQPSCDCAPVQQNPCCQQAQPACDCAPVQQQPACDCAPVQQNPCCQ---QQAQST 248
Query: 280 CPSGCIKTDPCACDYPKAGC 221
C ++ +PC C + C
Sbjct: 249 CDCAPVQQNPC-CQQAQPAC 267
>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
protein D1044.2c protein.
Length = 1090
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -3
Query: 346 GEDCTEYMDPCAYGDCKPCDCTCPSGCIKT-DPCACDYPKAGCCS 215
G DC Y C+ G C P C GC D AC + C +
Sbjct: 326 GPDCA-YCCHCSEGTCHPISGDCQRGCATCWDGVACQTRQEKCAT 369
>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
protein D1044.2a protein.
Length = 1051
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -3
Query: 346 GEDCTEYMDPCAYGDCKPCDCTCPSGCIKT-DPCACDYPKAGCCS 215
G DC Y C+ G C P C GC D AC + C +
Sbjct: 326 GPDCA-YCCHCSEGTCHPISGDCQRGCATCWDGVACQTRQEKCAT 369
>Z93393-15|CAE54926.1| 347|Caenorhabditis elegans Hypothetical
protein Y48E1B.16 protein.
Length = 347
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -1
Query: 432 PRGLARDNTKNRVKSWRGLQYTGPRSCLPARIAPSTWIPALMAIANLVTALAL-QDVLKR 256
PR A++N W Q GPR+ PA P +PA A + AL + V +R
Sbjct: 80 PRPPAQNNLPKSQYGWN-TQAPGPRAPAPAPTRPQYGVPAPRAPQPTIPALTTKKSVFER 138
Query: 255 IPVPAITRKRVV 220
+ A +++ V
Sbjct: 139 LKEKAKGKEKYV 150
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 735 PATTTCGVRVPCRTSPRNDTTTCPSRLYSGSRSNRLTSTTASNNR 601
P TTT P T+ TTT P+ S + + T+TT + +
Sbjct: 224 PTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTK 268
>AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical
protein Y53G8AR.1 protein.
Length = 272
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/80 (30%), Positives = 32/80 (40%)
Frame = +1
Query: 559 PGPKTTSDSRSDFQTVVRRSGTCEPV*TTPGVQTAWARSRVVAW*CSAWDPDPTCRGGRA 738
P PK S + + TC TP TAW +++ + SA DPD R
Sbjct: 138 PEPKAVSCDYVCYGYCTKYDLTCY---LTPTSNTAWWKNQTIGEPGSACDPD---RYNID 191
Query: 739 GSTASRTPGSVGTTTFAPCP 798
G + P + TTT P P
Sbjct: 192 GLCSLNPPTTTTTTTVKPPP 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,093,532
Number of Sequences: 27780
Number of extensions: 573820
Number of successful extensions: 2049
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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