Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f12
(834 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 25 0.86
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 24 2.0
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 2.6
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 23 3.5
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 23 3.5
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 3.5
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 23 3.5
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 23 4.6
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 23 4.6
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 22 8.0
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 25.0 bits (52), Expect = 0.86
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -3
Query: 316 CAYGDCKPCDCTCPSGC 266
C D C+ TCP+GC
Sbjct: 749 CCDFDACDCEMTCPAGC 765
Score = 21.8 bits (44), Expect = 8.0
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +1
Query: 127 KFISD*KIIRFEFGIRILCCQCSKKWLTLTNN 222
K D + F G C CS WL NN
Sbjct: 665 KVAEDRPLPEFYIGGNPFNCNCSMDWLPGINN 696
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.8 bits (49), Expect = 2.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 733 RAGSTASRTPGSVGTTTFAPCPLP 804
+AGST + TP +V TTT A LP
Sbjct: 207 KAGSTDASTPATV-TTTGATTTLP 229
Score = 22.2 bits (45), Expect = 6.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 695 HHHATTRLRAQAVCTPGVVQTGSQ 624
HHH +T +AQA P Q Q
Sbjct: 815 HHHQSTHPQAQAQAQPQQQQQQQQ 838
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.4 bits (48), Expect = 2.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 699 RTSPRNDTTTCPSRLYSGSRSNRLTSTTASNNRLKIG 589
+TS ND T S + +T+T NN+ +IG
Sbjct: 993 QTSANNDKDTNAVVTQSKEARDNITATKQLNNKARIG 1029
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 23.0 bits (47), Expect = 3.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 299 AIAISAGIHVLGAILAGRQERGPVYC-SPLQLLTRFFVLSLA 421
A +++ G VL +L V+ PL+++ FF++SLA
Sbjct: 38 AASLTLGFLVLATVLGNALVILSVFTYRPLRIVQNFFIVSLA 79
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 23.0 bits (47), Expect = 3.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 299 AIAISAGIHVLGAILAGRQERGPVYC-SPLQLLTRFFVLSLA 421
A +++ G VL +L V+ PL+++ FF++SLA
Sbjct: 38 AASLTLGFLVLATVLGNALVILSVFTYRPLRIVQNFFIVSLA 79
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 193 SKKWLTLTNNNPLSGNRRHRDPF 261
SK+ ++NNNPLS N + + +
Sbjct: 76 SKEPKIISNNNPLSNNYNYNNNY 98
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 23.0 bits (47), Expect = 3.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 299 AIAISAGIHVLGAILAGRQERGPVYC-SPLQLLTRFFVLSLA 421
A +++ G VL +L V+ PL+++ FF++SLA
Sbjct: 38 AASLTLGFLVLATVLGNALVILSVFTYRPLRIVQNFFIVSLA 79
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 22.6 bits (46), Expect = 4.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 404 KTVSKVGGDYNIPV 363
KTVSKV G +++P+
Sbjct: 48 KTVSKVPGPFSLPI 61
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 22.6 bits (46), Expect = 4.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 307 HKRRDPCTRCNPRRE 351
H DPC R PRR+
Sbjct: 714 HYETDPCVRYYPRRK 728
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 304 RHKRRDPCTRCNPRREARTRTGI 372
R+ ++ C RC+P + TRTG+
Sbjct: 324 RNAFKETC-RCSPSNPSITRTGL 345
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,515
Number of Sequences: 438
Number of extensions: 6845
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -