Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f10
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    30   0.41 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    28   1.7  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   5.1  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   8.9  

>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 15  RQYIFHINLDLGT*TKILDFLRSSRINITIL---CISYNILP 131
           +  +  IN    T TKI DFLR+ R  + +L   C+ YN  P
Sbjct: 147 KNLLLAINYSPKTYTKIFDFLRNGRAPLQVLVHHCMLYNFYP 188


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 235 TGSSINLLEMID*MCHLFGLHDLSLYMAPYVPPLKGSI 122
           T  S+N+ E +D  C LF      +  AP+VP + GS+
Sbjct: 755 TAVSVNVKERLDYSCALFSPDGGLVANAPHVPAMLGSM 792


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 409 RQTHMTDLILYYIACCVHY 465
           RQ   ++L+ YYI CC +Y
Sbjct: 507 RQVKYSELLNYYIECCKNY 525


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 441 IQNEICHVRLSVTHRQKSGACRSSLRFS 358
           +QNE+  +R SV HR+   A  + LR++
Sbjct: 635 LQNEVSILRSSVNHREVDEAIDNILRYT 662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,490
Number of Sequences: 5004
Number of extensions: 65937
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)