Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f10
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948...    29   5.3  
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732...    28   7.0  
02_02_0661 - 12731005-12731238,12732756-12732884,12732969-127331...    28   9.3  

>03_02_1010 -
           13194002-13194339,13194421-13194573,13194661-13194809,
           13194932-13195184,13195282-13195469,13195684-13195841,
           13196093-13196307,13196410-13196614
          Length = 552

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 247 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF-LKLNPQAKAK 369
           K KGR +  L   CS+  R  C+SE    +F  KL  Q + +
Sbjct: 366 KNKGRMARYLANKCSIASRIDCYSESATAVFGQKLREQVEER 407


>07_03_1578 +
           27872636-27872840,27872928-27873175,27873215-27873295,
           27873665-27873822,27874391-27874450,27874655-27874873,
           27875100-27875201,27875352-27875500,27875582-27875734,
           27875839-27876194
          Length = 576

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 247 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF-LKLNPQAKAK 369
           + KGR +  L   CS+  R  C+SEL   +F  KL  Q + +
Sbjct: 384 RNKGRIARYLANKCSIASRIDCYSELNTSVFGQKLREQVEER 425


>02_02_0661 -
           12731005-12731238,12732756-12732884,12732969-12733193,
           12733302-12733478,12733576-12733788
          Length = 325

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 228 EPVEGLKDERKIFHRAG*ILLGRPTVPVFFGTCIYAVFETE 350
           +P  G K  R+++  A    +G+PTVPV +   +  V   E
Sbjct: 104 DPFNGAKTIRELYEIASPNYIGKPTVPVLWDKQLKTVVNNE 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,752,597
Number of Sequences: 37544
Number of extensions: 391342
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)