Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f10
         (758 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC131802-1|AAI31803.1| 1872|Homo sapiens KIAA0564 protein protein.     32   2.0  
AL354833-3|CAI39586.1| 1429|Homo sapiens protein ( Human DNA seq...    32   2.0  
AL163544-1|CAI40169.1| 1429|Homo sapiens protein ( Human DNA seq...    32   2.0  
AL161417-1|CAI39490.1| 1429|Homo sapiens protein ( Human DNA seq...    32   2.0  
AL160252-1|CAI40564.1| 1429|Homo sapiens protein ( Human DNA seq...    32   2.0  
AB011136-1|BAA25490.1| 1441|Homo sapiens KIAA0564 protein protein.     32   2.0  
BC034778-1|AAH34778.1|  477|Homo sapiens potassium voltage-gated...    31   3.4  
BC027932-1|AAH27932.1|  477|Homo sapiens potassium voltage-gated...    31   3.4  
AB032970-1|BAA86458.1|  489|Homo sapiens KIAA1144 protein protein.     31   3.4  
Y12065-1|CAA72789.1|  602|Homo sapiens hNop56 protein.                 31   6.0  
BC104793-1|AAI04794.1|  594|Homo sapiens nucleolar protein 5A pr...    31   6.0  
BC104791-1|AAI04792.1|  594|Homo sapiens nucleolar protein 5A (5...    31   6.0  
BC018421-1|AAH18421.1|  447|Homo sapiens Unknown (protein for IM...    31   6.0  
AL049712-4|CAC01444.2|  594|Homo sapiens nucleolar protein 5A (5...    31   6.0  
AL049712-3|CAI22416.1|  218|Homo sapiens nucleolar protein 5A (5...    31   6.0  

>BC131802-1|AAI31803.1| 1872|Homo sapiens KIAA0564 protein protein.
          Length = 1872

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 157  MAPYVPPLKGSI-LYEMQSIVILILDERRKSRIFVYVPKSRFMWK 26
            +AP   PLKG + L+E QS VIL+LD   ++   + +P  +F  K
Sbjct: 1138 VAPLGSPLKGQVVLHEQQSNVILLLDTTGRALHRLILPSEKFTSK 1182


>AL354833-3|CAI39586.1| 1429|Homo sapiens protein ( Human DNA
           sequence from clone RP11-157L14 on chromosome 13
           Contains an olfactory receptor pseudogene, a novel gene
           (RGC32), the 3' end  ).
          Length = 1429

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 157 MAPYVPPLKGSI-LYEMQSIVILILDERRKSRIFVYVPKSRFMWK 26
           +AP   PLKG + L+E QS VIL+LD   ++   + +P  +F  K
Sbjct: 695 VAPLGSPLKGQVVLHEQQSNVILLLDTTGRALHRLILPSEKFTSK 739


>AL163544-1|CAI40169.1| 1429|Homo sapiens protein ( Human DNA
           sequence from clone RP11-322A14 on chromosome 13. ).
          Length = 1429

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 157 MAPYVPPLKGSI-LYEMQSIVILILDERRKSRIFVYVPKSRFMWK 26
           +AP   PLKG + L+E QS VIL+LD   ++   + +P  +F  K
Sbjct: 695 VAPLGSPLKGQVVLHEQQSNVILLLDTTGRALHRLILPSEKFTSK 739


>AL161417-1|CAI39490.1| 1429|Homo sapiens protein ( Human DNA
           sequence from clone RP11-125A7 on chromosome 13. ).
          Length = 1429

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 157 MAPYVPPLKGSI-LYEMQSIVILILDERRKSRIFVYVPKSRFMWK 26
           +AP   PLKG + L+E QS VIL+LD   ++   + +P  +F  K
Sbjct: 695 VAPLGSPLKGQVVLHEQQSNVILLLDTTGRALHRLILPSEKFTSK 739


>AL160252-1|CAI40564.1| 1429|Homo sapiens protein ( Human DNA
           sequence from clone RP11-395K16 on chromosome 13. ).
          Length = 1429

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 157 MAPYVPPLKGSI-LYEMQSIVILILDERRKSRIFVYVPKSRFMWK 26
           +AP   PLKG + L+E QS VIL+LD   ++   + +P  +F  K
Sbjct: 695 VAPLGSPLKGQVVLHEQQSNVILLLDTTGRALHRLILPSEKFTSK 739


>AB011136-1|BAA25490.1| 1441|Homo sapiens KIAA0564 protein protein.
          Length = 1441

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 157 MAPYVPPLKGSI-LYEMQSIVILILDERRKSRIFVYVPKSRFMWK 26
           +AP   PLKG + L+E QS VIL+LD   ++   + +P  +F  K
Sbjct: 707 VAPLGSPLKGQVVLHEQQSNVILLLDTTGRALHRLILPSEKFTSK 751


>BC034778-1|AAH34778.1|  477|Homo sapiens potassium voltage-gated
           channel, delayed-rectifier, subfamily S, member 2
           protein.
          Length = 477

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -1

Query: 356 CGFSFKNSIYTSSEKHWDRRSTEQYLTSSVEDLPFVF*AFHRFINKPFGNDR 201
           C +S+        ++ WD +S ++  TSS +++   +    +F  +P GN R
Sbjct: 119 CSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGNFR 170


>BC027932-1|AAH27932.1|  477|Homo sapiens potassium voltage-gated
           channel, delayed-rectifier, subfamily S, member 2
           protein.
          Length = 477

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -1

Query: 356 CGFSFKNSIYTSSEKHWDRRSTEQYLTSSVEDLPFVF*AFHRFINKPFGNDR 201
           C +S+        ++ WD +S ++  TSS +++   +    +F  +P GN R
Sbjct: 119 CSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGNFR 170


>AB032970-1|BAA86458.1|  489|Homo sapiens KIAA1144 protein protein.
          Length = 489

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -1

Query: 356 CGFSFKNSIYTSSEKHWDRRSTEQYLTSSVEDLPFVF*AFHRFINKPFGNDR 201
           C +S+        ++ WD +S ++  TSS +++   +    +F  +P GN R
Sbjct: 131 CSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGNFR 182


>Y12065-1|CAA72789.1|  602|Homo sapiens hNop56 protein.
          Length = 602

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 247 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF-LKLNPQAKAK 369
           K KGR S  L   CS+  R  CFSE+   +F  KL  Q + +
Sbjct: 369 KNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEER 410


>BC104793-1|AAI04794.1|  594|Homo sapiens nucleolar protein 5A
           protein.
          Length = 594

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 247 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF-LKLNPQAKAK 369
           K KGR S  L   CS+  R  CFSE+   +F  KL  Q + +
Sbjct: 363 KNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEER 404


>BC104791-1|AAI04792.1|  594|Homo sapiens nucleolar protein 5A
           (56kDa with KKE/D repeat) protein.
          Length = 594

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 247 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF-LKLNPQAKAK 369
           K KGR S  L   CS+  R  CFSE+   +F  KL  Q + +
Sbjct: 363 KNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEER 404


>BC018421-1|AAH18421.1|  447|Homo sapiens Unknown (protein for
           IMAGE:4448930) protein.
          Length = 447

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 247 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF-LKLNPQAKAK 369
           K KGR S  L   CS+  R  CFSE+   +F  KL  Q + +
Sbjct: 359 KNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEER 400


>AL049712-4|CAC01444.2|  594|Homo sapiens nucleolar protein 5A
           (56kDa with KKE/D repeat) protein.
          Length = 594

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 247 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF-LKLNPQAKAK 369
           K KGR S  L   CS+  R  CFSE+   +F  KL  Q + +
Sbjct: 363 KNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEER 404


>AL049712-3|CAI22416.1|  218|Homo sapiens nucleolar protein 5A
           (56kDa with KKE/D repeat) protein.
          Length = 218

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 247 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF-LKLNPQAKAK 369
           K KGR S  L   CS+  R  CFSE+   +F  KL  Q + +
Sbjct: 103 KNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEER 144


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,658,020
Number of Sequences: 237096
Number of extensions: 2231279
Number of successful extensions: 3445
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3439
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)