Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f10
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical
           protein C38C6.5 protein.
          Length = 443

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 501 QKTADRKYILFLIMYTAGNVIQNEICHVRLSVTHRQKSGACR 376
           +K ++   I + IM T  +V+Q  I H   ++TH  + G+CR
Sbjct: 137 KKVSENMPIAYKIMPTTKDVLQEHIKHSAYAITHIAQGGSCR 178


>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 247 KTKGRSSTELVKYCSVDRRSQCFSE 321
           K KGR S  L   CS+  R  CFSE
Sbjct: 369 KNKGRVSRYLANKCSIAARVDCFSE 393


>Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical
           protein C39E9.7 protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 421 MTDLILYYIACCVHYQEEYVFSIGSLLFCVSKQLPSSTALRTFTLQ 558
           +T +I++++   +H+ E++    G++ FC +      T  RTF L+
Sbjct: 259 ITIVIIFFVFVLIHFDEDFKERAGTIGFCNAMFEYERTRSRTFDLR 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,171
Number of Sequences: 27780
Number of extensions: 365559
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)