Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f05
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    29   1.1  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    27   2.6  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   4.5  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  

>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 231 PGNLCYHYERKKPLSTHNACAPPHSSCQLCASSPECQYVNYIHAQP 94
           P +  Y Y R     T  +C+ P + C    +SP   Y+NY    P
Sbjct: 379 PSSRFYEYTRPTYGRTDTSCSAPGAFCSTQINSPS-SYINYSKCAP 423


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 231 PGNLCYHYERKKPLSTHNACAPPHSSCQLCASSPECQY 118
           PGN    Y    P S +N   PP+ + Q  A  P+  Y
Sbjct: 87  PGNASTMYASPPPSSNYNTAKPPYQTSQFYA-RPQSSY 123


>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 103 VNIVDVLTFWT*G--AELTRRVRRCASIVSRQRFLSFV 210
           VNI D+L FWT G       RVR    + +RQ    FV
Sbjct: 228 VNIADMLQFWTSGKLRSTVHRVRIDPGVKTRQTIAYFV 265


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
 Frame = +1

Query: 292 NLVVGISSIRSFYEGLTTPTDSRCHLAGAPH*NRWLIVSSKHSIHNGRHLRSTIFQTRLD 471
           N  + ++S  +   G  + TDSR + A +      L+ SS  S  NG H+      + + 
Sbjct: 304 NKQINLASAATNVTGYVSETDSRPNRANSLDSAVLLVQSSNKSNRNGHHISDPNLNSSIS 363

Query: 472 VKLNSFSRVTHSTLA*RTFHSSNISP--SDTSIGFFRSKQQPR 594
           +K  +     H++L        N+ P  + TS+      + PR
Sbjct: 364 LKF-APEDTAHNSLT----SQENVGPQVTTTSLSNMTVAESPR 401


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -3

Query: 306 PYDEVHRYHSEDEQVNN--REHS*SHFPGNLCYHYERKKPLSTHNACAPPHSS 154
           PY+ +HR H    Q +N  R +           H  R  P+ TH +    +SS
Sbjct: 424 PYNGIHRLHESPSQFSNQSRYNWEPILENRSLLHLNRPPPIETHYSYESNNSS 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,441,109
Number of Sequences: 5004
Number of extensions: 73118
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)