Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f05
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042     33   0.22 
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115...    33   0.38 
07_03_1697 - 28795521-28797328,28797430-28797550                       30   2.0  
02_05_0585 + 30155021-30155910,30156130-30157006                       30   2.0  
10_08_0674 + 19788198-19789817                                         29   6.2  
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366...    29   6.2  
05_05_0290 - 23879064-23880035                                         28   8.3  

>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
          Length = 819

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 739 CIPFRLNAVTGNFCTWNGPEGPLLATDYEF*QYFFW 846
           CIP RL A TG++  W G E       YEF +Y+ W
Sbjct: 37  CIP-RLQAATGDYTPWLGQEFASEHEAYEFYRYYAW 71


>08_02_1060 +
           24007980-24008662,24010078-24010219,24010293-24011537,
           24012453-24013040
          Length = 885

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 541 ISPSDTSIGFFRSKQQPRPGLEVQGGTFAGSPTLTGLAHTS 663
           +SP D  +GF   KQQ  PG        +GSP L G+A  S
Sbjct: 688 VSPCDLQLGFSGQKQQILPGYGELRPAASGSPQLGGMAANS 728


>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 219 CYHYERKKPLSTHNACAPPHSSCQLCAS 136
           C H  R  P S H+ C PPH   Q C S
Sbjct: 355 CCHDARHGP-SCHHGCCPPHHGKQACTS 381


>02_05_0585 + 30155021-30155910,30156130-30157006
          Length = 588

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 761 AFKRNGMQDQEHSKLLGATNFLVRCPRDVSIECDVCARPVKVGDPAKVPPCTS 603
           A+KR   + ++H    G    L+RC     +      +PV++  P K+PP TS
Sbjct: 518 AYKRGATEIKQHPFFEGVNWALIRCASPPEVP-----KPVEIERPPKLPPSTS 565


>10_08_0674 + 19788198-19789817
          Length = 539

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +1

Query: 547 PSDTSIGFFRSKQQPRPGLEVQGGTF--AGSPTLTGLA 654
           P  T  G  R   +PR G  +  G F   G+P   GLA
Sbjct: 415 PQTTGCGVLRGSARPRDGAHINLGAFYGVGTPVAVGLA 452


>02_01_0502 -
           3659564-3659660,3659923-3660061,3660161-3660238,
           3660486-3660654,3660757-3660873,3660956-3661102,
           3661203-3661388,3661472-3661720,3662196-3662432,
           3662511-3662673,3662748-3662866,3662976-3663068,
           3663595-3663735,3663813-3663896,3663974-3664084,
           3664162-3664260,3664501-3664623,3664908-3664958,
           3665152-3665275,3665357-3665514,3665595-3665709,
           3665931-3666060,3666163-3666328,3667047-3667136,
           3667650-3667857,3668270-3668439,3668542-3668577
          Length = 1199

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 764 TAFKRNGMQDQEHSKLLGATNFLVRCPRDVSIECD 660
           T+   N  + +E+S L    +F++RCPRD+S  C+
Sbjct: 290 TSASENDEELREYS-LQALESFMLRCPRDISPYCE 323


>05_05_0290 - 23879064-23880035
          Length = 323

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 671 IECDVCARPVKVGDPAKVPPCTSKPGLGCCL 579
           + C VC   ++VG  AK  PC  K    C L
Sbjct: 197 VSCSVCLDDLEVGSQAKQMPCEHKFHSSCIL 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,659,169
Number of Sequences: 37544
Number of extensions: 494023
Number of successful extensions: 1465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)