Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f05
         (854 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033125-5|CAA21828.1|  959|Drosophila melanogaster EG:EG0007.12...    32   1.2  
AE014298-603|AAF45924.1| 1911|Drosophila melanogaster CG4857-PB ...    32   1.2  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    31   2.7  
BT025080-1|ABE73251.1|  597|Drosophila melanogaster IP15004p pro...    29   6.2  
AE014297-465|AAN13380.1| 1573|Drosophila melanogaster CG10272-PC...    29   6.2  
AE014297-464|AAN13379.1| 1848|Drosophila melanogaster CG10272-PD...    29   6.2  
AE014297-463|AAN13378.1| 1848|Drosophila melanogaster CG10272-PB...    29   6.2  
AE014297-462|AAF54122.2| 1848|Drosophila melanogaster CG10272-PA...    29   6.2  

>AL033125-5|CAA21828.1|  959|Drosophila melanogaster EG:EG0007.12
           protein.
          Length = 959

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 532 SSNISPSDTSIGFFRSKQQPRPGLEVQGGTFAGS 633
           S N  P+ +++   ++KQQ +P  E  GG+F+GS
Sbjct: 397 SVNFEPASSAMEAKQNKQQAQPSTEAAGGSFSGS 430


>AE014298-603|AAF45924.1| 1911|Drosophila melanogaster CG4857-PB
           protein.
          Length = 1911

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 532 SSNISPSDTSIGFFRSKQQPRPGLEVQGGTFAGS 633
           S N  P+ +++   ++KQQ +P  E  GG+F+GS
Sbjct: 397 SVNFEPASSAMEAKQNKQQAQPSTEAAGGSFSGS 430


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
             protein.
          Length = 23015

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -3

Query: 231   PGNLCYHYERKKPLSTHNACAP----PHSSCQLCASSPEC 124
             P   CY  ERK P +  N C P    P+S C++   +  C
Sbjct: 12711 PFTRCYQEERKPPTTPDNPCQPSPCGPNSECKVLNGNAAC 12750


>BT025080-1|ABE73251.1|  597|Drosophila melanogaster IP15004p
           protein.
          Length = 597

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 583 QQPRPGLEVQGGTFAGSPTLTGLAHTSHSMETSRGQRTRKLVAP 714
           Q+  PGL   G    G+  L  LAH +++ +   G R     AP
Sbjct: 475 QERGPGLGAGGAAAGGNSNLATLAHVAYAQKAQGGARANAGTAP 518


>AE014297-465|AAN13380.1| 1573|Drosophila melanogaster CG10272-PC,
            isoform C protein.
          Length = 1573

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 583  QQPRPGLEVQGGTFAGSPTLTGLAHTSHSMETSRGQRTRKLVAP 714
            Q+  PGL   G    G+  L  LAH +++ +   G R     AP
Sbjct: 1451 QERGPGLGAGGAAAGGNSNLATLAHVAYAQKAQGGARANAGTAP 1494


>AE014297-464|AAN13379.1| 1848|Drosophila melanogaster CG10272-PD,
            isoform D protein.
          Length = 1848

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 583  QQPRPGLEVQGGTFAGSPTLTGLAHTSHSMETSRGQRTRKLVAP 714
            Q+  PGL   G    G+  L  LAH +++ +   G R     AP
Sbjct: 1451 QERGPGLGAGGAAAGGNSNLATLAHVAYAQKAQGGARANAGTAP 1494


>AE014297-463|AAN13378.1| 1848|Drosophila melanogaster CG10272-PB,
            isoform B protein.
          Length = 1848

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 583  QQPRPGLEVQGGTFAGSPTLTGLAHTSHSMETSRGQRTRKLVAP 714
            Q+  PGL   G    G+  L  LAH +++ +   G R     AP
Sbjct: 1451 QERGPGLGAGGAAAGGNSNLATLAHVAYAQKAQGGARANAGTAP 1494


>AE014297-462|AAF54122.2| 1848|Drosophila melanogaster CG10272-PA,
            isoform A protein.
          Length = 1848

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 583  QQPRPGLEVQGGTFAGSPTLTGLAHTSHSMETSRGQRTRKLVAP 714
            Q+  PGL   G    G+  L  LAH +++ +   G R     AP
Sbjct: 1451 QERGPGLGAGGAAAGGNSNLATLAHVAYAQKAQGGARANAGTAP 1494


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,342,675
Number of Sequences: 53049
Number of extensions: 876395
Number of successful extensions: 2809
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2809
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)