Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f05
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    30   1.8  
U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine recept...    29   5.6  
U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine recept...    29   5.6  
U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine recept...    29   5.6  
AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.      29   5.6  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 621 FRRVAHFDGPRA-HVAFNGNVPGTTYKEISGSQQLRMLLILHSVPLERC 764
           F+ +A F G RA   A NG V    Y+++ G++   ++L+  ++  E+C
Sbjct: 133 FKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEKC 181


>U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformc protein.
          Length = 590

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 430 GRHLRSTIFQTRLDVKLNSFSRVTHSTLA*RTFHSSNISPSDTSIGFFRSKQQPRPGLEV 609
           G+H ++   Q  L++   SF   +  T++  +  +S ISP   S   F  K+ P P   +
Sbjct: 225 GKHFKNRTDQILLEI---SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKTPYPSTSI 281

Query: 610 QGGTFAGS-PTLT 645
                 GS P LT
Sbjct: 282 PAIPECGSMPNLT 294


>U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformb protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 430 GRHLRSTIFQTRLDVKLNSFSRVTHSTLA*RTFHSSNISPSDTSIGFFRSKQQPRPGLEV 609
           G+H ++   Q  L++   SF   +  T++  +  +S ISP   S   F  K+ P P   +
Sbjct: 242 GKHFKNRTDQILLEI---SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKTPYPSTSI 298

Query: 610 QGGTFAGS-PTLT 645
                 GS P LT
Sbjct: 299 PAIPECGSMPNLT 311


>U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine receptor
           protein 3, isoforma protein.
          Length = 605

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 430 GRHLRSTIFQTRLDVKLNSFSRVTHSTLA*RTFHSSNISPSDTSIGFFRSKQQPRPGLEV 609
           G+H ++   Q  L++   SF   +  T++  +  +S ISP   S   F  K+ P P   +
Sbjct: 240 GKHFKNRTDQILLEI---SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKTPYPSTSI 296

Query: 610 QGGTFAGS-PTLT 645
                 GS P LT
Sbjct: 297 PAIPECGSMPNLT 309


>AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 430 GRHLRSTIFQTRLDVKLNSFSRVTHSTLA*RTFHSSNISPSDTSIGFFRSKQQPRPGLEV 609
           G+H ++   Q  L++   SF   +  T++  +  +S ISP   S   F  K+ P P   +
Sbjct: 242 GKHFKNRTDQILLEI---SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKTPYPSTSI 298

Query: 610 QGGTFAGS-PTLT 645
                 GS P LT
Sbjct: 299 PAIPECGSMPNLT 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,515,245
Number of Sequences: 27780
Number of extensions: 437059
Number of successful extensions: 1242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)