Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f04
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0543 - 25404630-25405408,25405461-25405605 40 0.002
03_02_0484 + 8805053-8805538 40 0.002
03_02_0483 - 8804021-8804485 40 0.002
03_02_0478 + 8775892-8776377 39 0.003
01_05_0519 - 22897277-22897986,22898126-22898225 38 0.009
11_02_0041 - 7669692-7670312 37 0.012
03_02_0485 - 8808139-8808618 37 0.012
01_01_0227 + 1933247-1933699 37 0.016
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40... 31 0.80
03_05_0563 - 25651529-25651621,25651712-25651790,25651875-256519... 29 3.2
03_05_0542 - 25397482-25397692,25398239-25398683,25398878-25399007 29 4.2
02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174 28 5.6
01_04_0127 + 16417902-16418624 28 5.6
02_05_0972 + 33198035-33198277,33198366-33198641 28 7.4
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 28 7.4
04_01_0111 - 1136354-1136793,1136878-1136959,1137574-1137657,113... 27 9.8
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/91 (31%), Positives = 43/91 (47%)
Frame = -3
Query: 543 DKFQLSVDVHKFNKDELRVKARPDCLVIEGKQERKTKTGYVMRRFTRKFRLPPGCSPKKI 364
+ LS+D F ++E+RV + + + ER G RF + F+LP C+ I
Sbjct: 39 NSIHLSLDQLGFKREEIRVLV-DNHGHLRTRGERPV-AGNRWSRFQKDFQLPADCNVDGI 96
Query: 363 ESKLSPEGILTITAPRKNWETTTPCETLIPI 271
+K E LTIT P+K TP T P+
Sbjct: 97 RAKFENEA-LTITLPKKTPSPLTPSPTPSPV 126
>03_02_0484 + 8805053-8805538
Length = 161
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Frame = -3
Query: 522 DVHKFNKDELRVKARP-DCLVIEGK----QERKTKTGYVMRR----FTRKFRLPPGCSPK 370
DV K+E++V+ + L I G+ QE KT + + R F R+FRLP P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 369 KIESKLSPEGILTITAPRK 313
+I++ + G+LT+T P++
Sbjct: 130 QIKASME-NGVLTVTVPKE 147
>03_02_0483 - 8804021-8804485
Length = 154
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Frame = -3
Query: 522 DVHKFNKDELRVKARP-DCLVIEGK----QERKTKTGYVMRR----FTRKFRLPPGCSPK 370
DV K+E++V+ + L I G+ QE KT + + R F R+FRLP P+
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 369 KIESKLSPEGILTITAPRK 313
+I++ + G+LT+T P++
Sbjct: 123 QIKASME-NGVLTVTVPKE 140
>03_02_0478 + 8775892-8776377
Length = 161
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Frame = -3
Query: 522 DVHKFNKDELRVKARP-DCLVIEGK----QERKTKTGYVMRR----FTRKFRLPPGCSPK 370
DV K+E++V+ + L I G+ QE KT + + R F R+FRLP P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 369 KIESKLSPEGILTITAPRK 313
+I++ + G+LT+T P++
Sbjct: 130 QIKASME-NGVLTVTVPKE 147
>01_05_0519 - 22897277-22897986,22898126-22898225
Length = 269
Score = 37.5 bits (83), Expect = 0.009
Identities = 29/100 (29%), Positives = 48/100 (48%)
Frame = -3
Query: 537 FQLSVDVHKFNKDELRVKARPDCLVIEGKQERKTKTGYVMRRFTRKFRLPPGCSPKKIES 358
+ L V+V +F K+EL+V P G+ + + G + R + F+LPP C+ I
Sbjct: 26 YLLRVNVPEFKKEELQVHVDP-----AGRLTVRGQHGGL--RLNKVFQLPPTCNLDAITG 78
Query: 357 KLSPEGILTITAPRKNWETTTPCETLIPIGYSDPQKNDKE 238
+L +L +T P+K TT L P + +K K+
Sbjct: 79 RLE-ASVLVLTVPKKP-ATTAAAAALPPKANQEEEKETKK 116
>11_02_0041 - 7669692-7670312
Length = 206
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = -3
Query: 414 RFTRKFRLPPGCSPKKIESKLSPEGILTITAPR 316
RF R+FR+PPG ++ ++L +G+LT+T P+
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPK 172
>03_02_0485 - 8808139-8808618
Length = 159
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Frame = -3
Query: 522 DVHKFNKDELRVKARP-DCLVIEGK----QERKTKTGYVMRR----FTRKFRLPPGCSPK 370
DV K+E++V+ + L I G+ QE K+ + + R F R+FRLP P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 369 KIESKLSPEGILTITAPRK 313
+I++ + G+LT+T P++
Sbjct: 128 QIKASME-NGVLTVTVPKE 145
>01_01_0227 + 1933247-1933699
Length = 150
Score = 36.7 bits (81), Expect = 0.016
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Frame = -3
Query: 585 PQTRNLRSNIKIGKDKFQLSVDVHKFNKDELRVKARPD-CLVIEGKQERKTKTG------ 427
P N+R + K + D+ KD+ +V+ LVI G++ R+
Sbjct: 35 PVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDER 94
Query: 426 --YVMR---RFTRKFRLPPGCSPKKIESKLSPEGILTITAPRKNWETTTPCETLIPI 271
+V R +F R+FRLP G ++ + + G+LT+T P++ ET P IPI
Sbjct: 95 WHHVERSSGKFQRRFRLPRGARVDQVSASMD-NGVLTVTVPKE--ETKKPQLKAIPI 148
>06_01_0041 +
403634-403817,404154-404332,404431-404536,404620-404936,
405231-405605,406199-406283,406570-408066,408575-408738
Length = 968
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 480 RPDCLVIEGK-QERKTKTGYVMRRFTRKFRLPPGCSPKKIESKLSPE 343
+PD I QE TKT V+ T + +PPG S +E KL P+
Sbjct: 207 KPDGSAISSAYQEDTTKTSSVLSASTARPLVPPGFSNAFVEKKLQPQ 253
>03_05_0563 -
25651529-25651621,25651712-25651790,25651875-25651920,
25652001-25652264,25652361-25652484,25652727-25652780,
25653589-25653657,25653752-25654021
Length = 332
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 396 RLPPGCSPKKIESKLSPEGILTITAPRKNWETTTPCETLIPIGY 265
RL P +PK + + SP + T P+ TT+P +T I GY
Sbjct: 192 RLTPEATPKIMSTSASPRRMSTTATPKLMSGTTSPSKTRIE-GY 234
>03_05_0542 - 25397482-25397692,25398239-25398683,25398878-25399007
Length = 261
Score = 28.7 bits (61), Expect = 4.2
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = -3
Query: 546 KDKFQLSVDVHKFNKDELRVKARPD-CLVIEGKQERKTKTGYVMRRFTRKFRLPPGCSPK 370
+D L VDV F K+EL+V L + G ER+ G RF + F +P C
Sbjct: 33 EDADTLVVDVSGFRKEELKVLYNTSRKLKVAG--ERRADGGQ-WARFLKMFPVPRSCDAG 89
Query: 369 KIESKL-SPEGILTITAPR 316
I + + + E +L + P+
Sbjct: 90 AIRAVMDNEEALLYVILPK 108
>02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174
Length = 340
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 519 VHKFNKDELRVKAR-PDCLVIEGKQERKTKTGYVMRRFTRKFRLPPGCSPKK 367
V+ + D LR A +C V+E ++ R +G++ F R+ R PG P +
Sbjct: 282 VYSYCYDTLRYPAPFLECDVVESERRRFKGSGHLRLAFRRRRRTRPGSRPAR 333
>01_04_0127 + 16417902-16418624
Length = 240
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 302 VSQFFLGAVIVRMPSGD-SLDSIFFGLQPGGNLNFLVNLLMT*PV-FVFLSCFPSI---T 466
V FF V + + D L + FFG PGGN LL P+ FLS F + T
Sbjct: 162 VHSFFTAMVFLTVAFSDVGLQNCFFGQNPGGNTK---ELLKNLPLGMAFLSSFVFLIFPT 218
Query: 467 RQSGLAF 487
++ G+ +
Sbjct: 219 KRKGIGY 225
>02_05_0972 + 33198035-33198277,33198366-33198641
Length = 172
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 417 RRFTRKFRLPPGCSPKKIESKLSPEGILTITAPRK 313
R F RKFRLP I ++ G+LT+T ++
Sbjct: 124 RAFARKFRLPEDADTGGISARCE-NGVLTVTVKKR 157
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -3
Query: 600 ISAIVPQTRNLRSNIKIGKDKFQLSVDVHKFNKDELRVKARPDCL-VIEGKQERKTKTGY 424
+ P + + +K+GKDK L V K + K R + VI + T +G+
Sbjct: 50 VVGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMRMGSTPSGF 109
Query: 423 VMRRFTRKFRLPPGCS 376
++ F L G S
Sbjct: 110 IIFDFLNNDTLCRGAS 125
>04_01_0111 -
1136354-1136793,1136878-1136959,1137574-1137657,
1137749-1137931,1138263-1138437,1138539-1138777
Length = 400
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 510 FNKDELRVKARPDCLVIEGKQ-ERKTKTGYVMRRFTRKFRLPPGCSPKK 367
F DE R+K D ++++ E TKTG ++ R+ RKF P CS ++
Sbjct: 162 FWDDEFRIKNTWDDMLLQHDTLEECTKTGTMVLRWVRKF--PFFCSDRE 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,013
Number of Sequences: 37544
Number of extensions: 246878
Number of successful extensions: 640
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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