Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f02
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.47
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 29 0.62
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 29 1.1
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 28 1.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 2.5
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 3.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.4
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 26 5.8
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.8
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 26 5.8
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 26 7.7
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +1
Query: 136 YSAFCSTLFCRHFCS-----STTISLESRYAMARNLYLSFRPPLTFLRN 267
Y F ST+ F S+ I ES+ A RNL ++ RPPL L+N
Sbjct: 191 YKTFSSTISNSDFLHRESSFSSLIDEESKLASLRNLNINDRPPLPVLKN 239
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 29.5 bits (63), Expect = 0.62
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 511 TGSKPWAPGIIWISRSKDSIRGCGVVYHIYCLSCLGD 401
TGS + +IW++ KD +R C +Y L +GD
Sbjct: 121 TGSPSGSHNLIWMTVYKDKLRRCPECGSVYKLKFMGD 157
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 425 LLPFLFGGYVFQL---YIAYTLYHLSYHPEATWQVPYLAALF 309
L P FG + + + A+T Y YHP W VP ++++F
Sbjct: 409 LYPLFFGSIMLPISMFWFAWTCY--PYHPYVHWIVPLISSIF 448
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 413 LFGGYVFQLYIAYTLYHLSYHPEATWQVPYL 321
L G Y +LYIAYT Y++ A+ QVP++
Sbjct: 234 LMGRYTSKLYIAYTTYYV-IGTLASMQVPFV 263
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 442 HIHEWNPSIVISILCLAPKALSLYSTPLWYL 534
H+ W P I++ I+ + L T LWY+
Sbjct: 702 HLCIWQPKILLGIMYVTDLVLFFLDTYLWYI 732
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 166 RHFCSSTTISLESRYAMARNLYLSFRPPLTFLRNVLNMVYMLQQCKVRNK 315
R + SS+ S S Y + N Y F P +LR + + +ML+ N+
Sbjct: 366 RKYLSSSNASTNSNYFPSSNAYRPFSPE-AYLRKLADYSFMLRDYSHANQ 414
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 457 SIRGCGVVYHIYCLSCL 407
SI CG YH++ LSC+
Sbjct: 209 SIWSCGTCYHVFHLSCI 225
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 133 LYSAFCSTLFCRHFCSSTT 189
LY+ FC F +HFC T
Sbjct: 93 LYNPFCRYTFYKHFCGGET 111
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 401 YVFQLYIAYTLYHLSYHPEATWQVPYLAALFLTLH 297
YV + Y AY++ ++YH EA PY+ LH
Sbjct: 1113 YVRRAYRAYSVLEINYHTEA--GTPYVLTWRFQLH 1145
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 516 YSTLVPELHVLYNTYISNKPHEGVPKFLP 602
YS LVP VL T + K H G PK P
Sbjct: 720 YSKLVPNTVVLVTTVKALKLHGGGPKLKP 748
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 7.7
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -3
Query: 561 YKCCTIHAVQVPEWSTIQAQSL 496
Y+ C+ +VP+W+T++A+ L
Sbjct: 135 YEYCSNSKARVPDWNTLKAECL 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,841,062
Number of Sequences: 5004
Number of extensions: 89309
Number of successful extensions: 248
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -