Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f02
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0342 - 3016705-3016884,3016963-3017031,3017322-3017408,301... 65 6e-11
02_01_0053 + 397406-397609,398483-398561,398648-398742,399289-39... 65 6e-11
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 34 0.12
07_03_0497 + 18777377-18777592,18777691-18778512 31 1.5
04_04_1042 - 30346132-30346285,30346629-30346759,30346867-303469... 30 2.7
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 29 4.6
01_06_0736 - 31585840-31586459,31586545-31587070,31588051-315881... 29 4.6
03_06_0091 + 31577363-31577562,31577627-31577749,31578580-315786... 29 6.1
02_01_0018 + 119890-120238,120331-120424,120518-121529 28 8.1
>08_01_0342 -
3016705-3016884,3016963-3017031,3017322-3017408,
3017603-3017650,3017783-3017873,3018243-3018322,
3018429-3018533,3019457-3019551,3019710-3019788,
3020214-3020402
Length = 340
Score = 65.3 bits (152), Expect = 6e-11
Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 4/185 (2%)
Frame = -1
Query: 773 PLQLILIFLLVWYYCTLTIRESILKVNGSRIKGWWRLHHFISTVVAGILLIWP-QNQPWE 597
P+QL +LL + Y TL +RE+IL+VNGS I+ WW HH+ + +++ I L W + QP
Sbjct: 151 PVQLYQAWLL-FLYTTLALRENILRVNGSDIRPWWMCHHYCAMLMSLISLTWEIKGQP-- 207
Query: 596 EFRHTFMWFIAYISVVQYMQFRYQSGVLYRLKALGARHNMDITIEGFHSWMWRGLSYLLP 417
Q RYQ LY ALG MD+ + G + + L L P
Sbjct: 208 --------------DCSRKQNRYQRQRLYTRIALGKARRMDV-VWGETAGVEGQLLLLCP 252
Query: 416 FLFGGYVFQLYIAYTLY---HLSYHPEATWQVPYLAALFLTLHCCNMYTILRTLRRKVKG 246
LF F+ Y+ + L H PE WQV L + + N + TL K +
Sbjct: 253 VLFLLQGFEGYVGFLLLRTAHTGIVPE--WQVVVCGVLLIAMAIGNFANTVDTLMAKSRF 310
Query: 245 GLKLR 231
K R
Sbjct: 311 KAKKR 315
>02_01_0053 +
397406-397609,398483-398561,398648-398742,399289-399393,
399496-399575,399832-399922,400021-400128,400529-400615,
400862-400972
Length = 319
Score = 65.3 bits (152), Expect = 6e-11
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Frame = -1
Query: 746 LVWYYCTLTIRESILKVNGSRIKGWWRLHHFISTVVAGILLIW-----PQNQPWEEFRHT 582
L++ Y + +RE++L VNGS I+ WW HH+++ ++A + L W P +
Sbjct: 164 LLFLYTSFALRENVLIVNGSDIRPWWIYHHYLAMLMALVSLTWEIKGQPDCSSKQRGVQL 223
Query: 581 FMWFIAYISVVQYMQFRYQSGVLYRLKALGARHNMDITIEGFHSWMWRGLSYLLPFLFGG 402
F+ + + ++Q RYQ L ALG MD+ + G + + L L P LF
Sbjct: 224 FLRWAIMQGIAMHLQNRYQRQRLRTRIALGKAKRMDV-VAGETAGVEGQLLLLYPVLFTL 282
Query: 401 YVFQLYIAYTLYHLSYHPEAT-WQ 333
VF+ Y+ L + H A+ WQ
Sbjct: 283 QVFEGYVGVLLLKTALHGLASEWQ 306
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -2
Query: 271 GHYAGRLKEA*N*DTSCAPLRIGSPMRSSYWNKNGGKTKSNRKRNKE 131
G AG+ + + DTS + IGSP ++S K GKTK+N ++ E
Sbjct: 128 GQVAGQYLSSDSEDTSTPSVLIGSPHKASTSKKLSGKTKTNPRKEPE 174
>07_03_0497 + 18777377-18777592,18777691-18778512
Length = 345
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 583 VCLNSSQGWFWGHISNIPATTVDMK*CKRHHPFILEPFTLSIL 711
VC+ S+ GW H ++ T K KRH F+ PFT + +
Sbjct: 10 VCVGSTDGWLALHRTDAATTAAGTK-TKRHTFFLHNPFTATTI 51
>04_04_1042 -
30346132-30346285,30346629-30346759,30346867-30346938,
30347284-30347370,30347479-30347505,30347777-30347869,
30348470-30348558,30348649-30348727,30349102-30349231,
30349344-30349464,30349619-30349726,30349837-30350152
Length = 468
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = -1
Query: 839 FKLILSAIAFILAVG----NLYIDFRPLQLILIFLLVWYYCTLTIRES 708
F+L+L I +L+ N ++D L L+L+F+L +Y+C L +R S
Sbjct: 58 FQLVLFEILPVLSKHARFLNWHLDLFCLILLLVFVLPYYHCYLLLRNS 105
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 29.1 bits (62), Expect = 4.6
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 598 RNLGTPSCGLLLI*VLYNTCSSG-TRVEYYTGSKPWAPGIIWISRSKDSIRGCGVVYHIY 422
R L P +L+ L +C S T+VE ++P GIIW +D+ GC +
Sbjct: 397 RMLQQPDVQILINKDLPCSCGSPLTQVECCKRTEPH--GIIWSYLHRDNPEGCSLCPFCL 454
Query: 421 CLSCLGDM 398
L CLG +
Sbjct: 455 VLPCLGKL 462
>01_06_0736 -
31585840-31586459,31586545-31587070,31588051-31588149,
31589344-31589427,31589458-31589775,31589907-31590113
Length = 617
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 341 SPRDGNSNGTMYKRCTVEKHIPQTRKAIDMIDHATSTNG 457
+P D NSN + + TV+ IP +A+ D T NG
Sbjct: 552 NPNDINSNIYLVQNTTVQGSIPNAYQAVSQPDQMTYLNG 590
>03_06_0091 +
31577363-31577562,31577627-31577749,31578580-31578687,
31579084-31579154,31579247-31579500
Length = 251
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 673 GGAYITSYRRWLREYCLYGPRTSLGRNLGTP 581
G + T++ +WL + GPR S G G+P
Sbjct: 50 GLGFGTTFLKWLAFFAAVGPRVSFGSKRGSP 80
>02_01_0018 + 119890-120238,120331-120424,120518-121529
Length = 484
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -3
Query: 447 DVAWSIISIAFLVWGICFSTVHRL--YIVPFELPSRGDLAGAIFSCLVPYFALLQHVYH 277
D+ W +S+ L W CF V + ++PF G L F L YF + ++ H
Sbjct: 377 DLGWIKVSVFRLAWRTCFVAVTTVVAMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAH 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,888,577
Number of Sequences: 37544
Number of extensions: 574760
Number of successful extensions: 1448
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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