Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f02
(842 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC127769-1|AAI27770.1| 339|Homo sapiens transmembrane protein 1... 218 2e-56
BC127768-1|AAI27769.1| 339|Homo sapiens transmembrane protein 1... 218 2e-56
AF327923-1|AAK16442.1| 343|Homo sapiens transmembrane protein i... 217 4e-56
BC051850-1|AAH51850.1| 343|Homo sapiens transmembrane protein 1... 215 2e-55
BC029487-1|AAH29487.1| 322|Homo sapiens TMEM120A protein protein. 54 9e-07
BC101042-1|AAI01043.1| 790|Homo sapiens zinc finger protein 560... 31 5.2
BC101041-1|AAI01042.1| 790|Homo sapiens zinc finger protein 560... 31 5.2
BC101040-1|AAI01041.1| 790|Homo sapiens zinc finger protein 560... 31 5.2
AK056548-1|BAB71213.1| 790|Homo sapiens protein ( Homo sapiens ... 31 5.2
>BC127769-1|AAI27770.1| 339|Homo sapiens transmembrane protein 120B
protein.
Length = 339
Score = 218 bits (533), Expect = 2e-56
Identities = 103/200 (51%), Positives = 139/200 (69%), Gaps = 2/200 (1%)
Frame = -1
Query: 842 KFKLILSAIAFILAVGNLYI-DFRPLQLILIFLLVWYYCTLTIRESILKVNGSRIKGWWR 666
KFKL L+ I + AV ++ +R + FLLVWYYCTLTIRESIL NGSRIKGWW
Sbjct: 131 KFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKGWWV 190
Query: 665 LHHFISTVVAGILLIWPQNQPWEEFRHTFMWFIAYISVVQYMQFRYQSGVLYRLKALGAR 486
HH++ST ++G++L WP +++FR+ F+ F + S VQ++Q+ YQ G LYRL+ALG R
Sbjct: 191 SHHYVSTFLSGVMLTWPNGPIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRALGER 250
Query: 485 HNMDITIEGFHSWMWRGLSYLLPFLFGGYVFQLYIAYTLYHLSYHPEA-TWQVPYLAALF 309
+++D+T+EGF SWMWRGL++LLPFLF G+ +QLY A TL+ LS H E WQV LA F
Sbjct: 251 NHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELSSHEECREWQVFVLAFTF 310
Query: 308 LTLHCCNMYTILRTLRRKVK 249
L L N T L+ + K++
Sbjct: 311 LILFLGNFLTTLKVVHAKLQ 330
>BC127768-1|AAI27769.1| 339|Homo sapiens transmembrane protein 120B
protein.
Length = 339
Score = 218 bits (533), Expect = 2e-56
Identities = 103/200 (51%), Positives = 139/200 (69%), Gaps = 2/200 (1%)
Frame = -1
Query: 842 KFKLILSAIAFILAVGNLYI-DFRPLQLILIFLLVWYYCTLTIRESILKVNGSRIKGWWR 666
KFKL L+ I + AV ++ +R + FLLVWYYCTLTIRESIL NGSRIKGWW
Sbjct: 131 KFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKGWWV 190
Query: 665 LHHFISTVVAGILLIWPQNQPWEEFRHTFMWFIAYISVVQYMQFRYQSGVLYRLKALGAR 486
HH++ST ++G++L WP +++FR+ F+ F + S VQ++Q+ YQ G LYRL+ALG R
Sbjct: 191 SHHYVSTFLSGVMLTWPNGPIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRALGER 250
Query: 485 HNMDITIEGFHSWMWRGLSYLLPFLFGGYVFQLYIAYTLYHLSYHPEA-TWQVPYLAALF 309
+++D+T+EGF SWMWRGL++LLPFLF G+ +QLY A TL+ LS H E WQV LA F
Sbjct: 251 NHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELSSHEECREWQVFVLAFTF 310
Query: 308 LTLHCCNMYTILRTLRRKVK 249
L L N T L+ + K++
Sbjct: 311 LILFLGNFLTTLKVVHAKLQ 330
>AF327923-1|AAK16442.1| 343|Homo sapiens transmembrane protein
induced by tumor necrosis factor alpha protein.
Length = 343
Score = 217 bits (530), Expect = 4e-56
Identities = 101/198 (51%), Positives = 135/198 (68%), Gaps = 2/198 (1%)
Frame = -1
Query: 842 KFKLILSAIAFILAVG-NLYIDFRPLQLILIFLLVWYYCTLTIRESILKVNGSRIKGWWR 666
KFKL L+ I +++ ++ R FLLVWYYCTLTIRESIL NGSRIKGWW
Sbjct: 135 KFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGWWV 194
Query: 665 LHHFISTVVAGILLIWPQNQPWEEFRHTFMWFIAYISVVQYMQFRYQSGVLYRLKALGAR 486
HH++ST ++G++L WP +++FR+ F+ F Y S VQ++Q+ YQSG LYRL+ALG R
Sbjct: 195 FHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGER 254
Query: 485 HNMDITIEGFHSWMWRGLSYLLPFLFGGYVFQLYIAYTLYHLSYHPEA-TWQVPYLAALF 309
H MD+T+EGF SWMWRGL++LLPFLF G+ +QL+ A TL++L+ P+ WQV F
Sbjct: 255 HTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLAQDPQCKEWQVLMCGFPF 314
Query: 308 LTLHCCNMYTILRTLRRK 255
L L N +T LR + K
Sbjct: 315 LLLFLGNFFTTLRVVHHK 332
>BC051850-1|AAH51850.1| 343|Homo sapiens transmembrane protein 120A
protein.
Length = 343
Score = 215 bits (525), Expect = 2e-55
Identities = 100/198 (50%), Positives = 134/198 (67%), Gaps = 2/198 (1%)
Frame = -1
Query: 842 KFKLILSAIAFILAVG-NLYIDFRPLQLILIFLLVWYYCTLTIRESILKVNGSRIKGWWR 666
KFKL L+ I +++ ++ R FLLVWYYCTLTIRESIL NGSRIKGWW
Sbjct: 135 KFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGWWV 194
Query: 665 LHHFISTVVAGILLIWPQNQPWEEFRHTFMWFIAYISVVQYMQFRYQSGVLYRLKALGAR 486
HH++S ++G++L WP +++FR+ F+ F Y S VQ++Q+ YQSG LYRL+ALG R
Sbjct: 195 FHHYVSAFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGER 254
Query: 485 HNMDITIEGFHSWMWRGLSYLLPFLFGGYVFQLYIAYTLYHLSYHPEA-TWQVPYLAALF 309
H MD+T+EGF SWMWRGL++LLPFLF G+ +QL+ A TL++L+ P+ WQV F
Sbjct: 255 HTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLAQDPQCKEWQVLMCGFPF 314
Query: 308 LTLHCCNMYTILRTLRRK 255
L L N +T LR + K
Sbjct: 315 LLLFLGNFFTTLRVVHHK 332
>BC029487-1|AAH29487.1| 322|Homo sapiens TMEM120A protein protein.
Length = 322
Score = 53.6 bits (123), Expect = 9e-07
Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = -1
Query: 842 KFKLILSAIAFILAVG-NLYIDFRPLQLILIFLLVWYYCTLTIRESILKVNGSRIKG 675
KFKL L+ I +++ ++ R FLLVWYYCTLTIRESIL NGSR G
Sbjct: 135 KFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRWAG 191
Score = 32.3 bits (70), Expect = 2.3
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = -3
Query: 690 LKDKRMVALTSLHIDGGCGNIAYMAPEPALGGI*AHLHVVYCLYKCCTIHAVQVPEWSTI 511
L+D+R+V + SL + G+ A + + I + +++ + + + V +PE +
Sbjct: 221 LQDQRLVGVPSLRVHLPVGSHADVVRRSHVPEIPEPIPLLFHVPELRAVSPVLLPERLPL 280
Query: 510 QAQSLGRQA*YGYHDRRIPFVDVAWSIISIAF-LVW 406
GR A +G H +P +DVA + AF +W
Sbjct: 281 PPAGAGRAAHHGPHCGGLPVLDVAGPHLPAAFSFLW 316
>BC101042-1|AAI01043.1| 790|Homo sapiens zinc finger protein 560
protein.
Length = 790
Score = 31.1 bits (67), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 115 NQLGQSLYSAF-CSTLFCRHFCSSTTISLESR 207
NQ G+ LY C +FC+H C T +S ++R
Sbjct: 207 NQNGEELYDCKQCEDVFCKHPCLKTNMSTQNR 238
>BC101041-1|AAI01042.1| 790|Homo sapiens zinc finger protein 560
protein.
Length = 790
Score = 31.1 bits (67), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 115 NQLGQSLYSAF-CSTLFCRHFCSSTTISLESR 207
NQ G+ LY C +FC+H C T +S ++R
Sbjct: 207 NQNGEELYDCKQCEDVFCKHPCLKTNMSTQNR 238
>BC101040-1|AAI01041.1| 790|Homo sapiens zinc finger protein 560
protein.
Length = 790
Score = 31.1 bits (67), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 115 NQLGQSLYSAF-CSTLFCRHFCSSTTISLESR 207
NQ G+ LY C +FC+H C T +S ++R
Sbjct: 207 NQNGEELYDCKQCEDVFCKHPCLKTNMSTQNR 238
>AK056548-1|BAB71213.1| 790|Homo sapiens protein ( Homo sapiens
cDNA FLJ31986 fis, clone NT2RP7008720, weakly similar to
ZINC FINGER PROTEIN 84. ).
Length = 790
Score = 31.1 bits (67), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 115 NQLGQSLYSAF-CSTLFCRHFCSSTTISLESR 207
NQ G+ LY C +FC+H C T +S ++R
Sbjct: 207 NQNGEELYDCKQCEDVFCKHPCLKTNMSTQNR 238
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,342,220
Number of Sequences: 237096
Number of extensions: 3223273
Number of successful extensions: 13494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13494
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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