Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f02
(842 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF078786-3|AAC26943.2| 384|Caenorhabditis elegans Hypothetical ... 188 3e-48
Z47070-4|CAA87342.1| 363|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 28 7.2
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z99288-5|CAB16548.2| 336|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z77656-3|CAB01140.1| 424|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z75549-7|CAD60423.1| 306|Caenorhabditis elegans Hypothetical pr... 28 9.5
AL110484-28|CAB54395.2| 419|Caenorhabditis elegans Hypothetical... 28 9.5
AF326788-1|AAK38269.1| 424|Caenorhabditis elegans CLN-3.1 protein. 28 9.5
>AF078786-3|AAC26943.2| 384|Caenorhabditis elegans Hypothetical
protein M01G5.3 protein.
Length = 384
Score = 188 bits (459), Expect = 3e-48
Identities = 96/199 (48%), Positives = 127/199 (63%), Gaps = 2/199 (1%)
Frame = -1
Query: 839 FKLILSAIAFILAVGNLYIDFRPLQLILIFLLVWYYCTLTIRESILKVNGSRIKGWWRLH 660
FK ++ + +LA+ FR IL FL+VWYYCTLTIRES+L+VNGS+IKGWW H
Sbjct: 141 FKWSITILICLLALCAWIWPFRVFDSILCFLMVWYYCTLTIRESVLRVNGSKIKGWWLSH 200
Query: 659 HFISTVVAGILLIWPQNQPWEEFRHTFMWFIAYISVVQYMQFRYQSGVLYRLKALGARHN 480
H++S V GI+L W ++EFR F+ F YIS+VQ Q +YQSG L RL +LG H
Sbjct: 201 HYLSCAVPGIVLTWKDGLCYQEFRPYFLIFTFYISLVQLAQNQYQSGCLRRLHSLGQGHQ 260
Query: 479 MDITIEGFHSWMWRGLSYLLPFLFGGYVFQLYIAYTL--YHLSYHPEATWQVPYLAALFL 306
MDIT+EGF SW ++GL++LLPFL GY++QLY+A+ L Y S + WQV L+ L
Sbjct: 261 MDITVEGFTSWQFKGLTFLLPFLAFGYLYQLYLAWKLFGYTNSETCDGIWQVWTLSLLLG 320
Query: 305 TLHCCNMYTILRTLRRKVK 249
+ N+ T RK K
Sbjct: 321 LIAGGNIVTTSMVCIRKFK 339
>Z47070-4|CAA87342.1| 363|Caenorhabditis elegans Hypothetical
protein T09B9.5 protein.
Length = 363
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -3
Query: 432 IISIAFLVWGICFSTVHRLYIVPFELPSRGDLAGAIFSCLV 310
++ +AFL+ + S +H LY++ + LP R D A F C++
Sbjct: 263 VLELAFLIVPLLISFMHPLYLIWYVLPMR-DAATRTFPCML 302
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 160 FCRHFCSSTTISLESRYAMARNLYLSF-RPPLTFLRNVLN 276
FCR CS +L +RY +++L F +++L+N +N
Sbjct: 131 FCRDVCSKALENLGTRYDSGGHIWLIFLEYEMSYLKNSMN 170
>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
protein C52E12.4 protein.
Length = 1487
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 686 RIKGWWRLHHFISTVVAGILLIWPQNQPWEE 594
R +G W +H +T++ G LI P PW +
Sbjct: 687 RYEGAWPVHQLNTTLLDGANLISPAPSPWRQ 717
>Z99288-5|CAB16548.2| 336|Caenorhabditis elegans Hypothetical
protein ZK262.6 protein.
Length = 336
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 106 YHHNQLGQSLYSAFCSTLFCRHFCSSTTISLESRYAMARN 225
Y H + +L A+CS LF FC++ +M+RN
Sbjct: 268 YTHFDMYFNLILAYCSNLFSALFCANALAHFLINLSMSRN 307
>Z77656-3|CAB01140.1| 424|Caenorhabditis elegans Hypothetical
protein F07B10.1 protein.
Length = 424
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 422 LPFLFGG-YVFQLYIAYTLYHLSYHPEATWQVP 327
+P +F G Y F L I T+Y + HP +TW +P
Sbjct: 187 IPVVFAGAYFFLLTIPPTVYSPTIHP-STWIIP 218
>Z75549-7|CAD60423.1| 306|Caenorhabditis elegans Hypothetical
protein T19C4.8 protein.
Length = 306
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = -1
Query: 455 HSWMWRGLSYLLPFLFGGYVFQLYIAYTLYHLSYHPEATWQVPYLAALFLTLHCCNMYTI 276
H W+ G+ +++PF ++F LY Y Y+ + + +F TL C +
Sbjct: 128 HGWVVMGVIFIVPFFVTYHIF-LYDTYFQYNAVADKFSLASKYNIKDIFTTLSCFMVSCT 186
Query: 275 LRTLRRKVKGGLKLR 231
+ T+ LK+R
Sbjct: 187 VVTMISNFISYLKIR 201
>AL110484-28|CAB54395.2| 419|Caenorhabditis elegans Hypothetical
protein Y38E10A.4 protein.
Length = 419
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 460 PSIVISILCLAPKALSLYSTPLWYLNCMYCTTLI 561
PS+ S + +AP +S + P +Y N MYC+ L+
Sbjct: 300 PSMCNSSMIMAPGTISSPAYPGYYDNNMYCSYLL 333
>AF326788-1|AAK38269.1| 424|Caenorhabditis elegans CLN-3.1 protein.
Length = 424
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 422 LPFLFGG-YVFQLYIAYTLYHLSYHPEATWQVP 327
+P +F G Y F L I T+Y + HP +TW +P
Sbjct: 187 IPVVFAGAYFFLLTIPPTVYSPTIHP-STWIIP 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,424,805
Number of Sequences: 27780
Number of extensions: 505342
Number of successful extensions: 1491
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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