Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f01
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...   105   6e-24
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca...    79   1e-15
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   2.5  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   3.3  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   4.4  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   5.8  
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    26   5.8  

>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score =  105 bits (253), Expect = 6e-24
 Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 4/113 (3%)
 Frame = -2

Query: 793 MCSGPSMEPPLESNN-ILLTEHISPRLQK-LRRGDIIIAKSPSNPRQNICKRIKGLPGDK 620
           M SGPSM P L S    +L + +  R  +    GD++++  PS+ +Q++CKRI G+PGD 
Sbjct: 30  MTSGPSMMPTLNSGGEFVLLDKLHGRFARSCSVGDVVVSAKPSDSKQHVCKRIIGMPGDT 89

Query: 619 --VRGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWP 467
             V      +   +P GHVWL GDN ++S DSR YGPVP GLI+++V+ RVWP
Sbjct: 90  IYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRNYGPVPMGLIKAKVIARVWP 142


>SPBC336.13c |||mitochondrial inner membrane peptidase complex
           catalytic subunit 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 34/85 (40%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
 Frame = -2

Query: 706 RRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPKRSQVVP--RGHVWLEGDNSSNSAD 533
           +RGD++I +SP NP + + KR+ G+  D ++   PK+  +VP   GHVW+EGD   +S D
Sbjct: 73  KRGDVVILRSPENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQFHSID 132

Query: 532 SRIYGPVPAGLIRSRVVCRVWPLDK 458
           S  +GPV  GLI ++V+  ++P  +
Sbjct: 133 SNKFGPVSTGLITAKVIAILFPFSR 157


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 379 EFIHDKI*SHHRKNI*TCSTKPPVK*FCLMATLDTLL 489
           + IHD I  ++ K + TCS+   +K F +     TLL
Sbjct: 10  DMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLL 46


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 823 LYVRIYGDFVMCSGPSMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICK 647
           LY  +Y  F  CS    +PP +S   LL EH    ++K     +++A S     ++ C+
Sbjct: 258 LYTSLYHIFKWCSDFISKPPTKSLIRLLAEHTLNPVEK----SVLLALSDFRQDESYCR 312


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 772 EPPLESNNILLTEHISPRLQKLR 704
           E  +E  N LL E I PRL KLR
Sbjct: 189 EAKVEEINTLLREEIEPRLTKLR 211


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 760 ESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGN 608
           E   + +  +I+  +  LR  D+     PS P +  C+R+KG  G + RGN
Sbjct: 305 EFMQLSIAMYINSEMPGLRPSDM-----PSKPIRGFCQRLKGKQG-RFRGN 349


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = -2

Query: 757 SNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPG------DKVRGNFPKR 596
           SN I  T   S  +       +   K+PSNP  +I K I GL        D +R NF  +
Sbjct: 119 SNAISTTAEPSIAMNDTTPQTVNPTKAPSNPSASIAKSIAGLVQNFITTLDAIRLNFIAK 178

Query: 595 SQVVP 581
            Q+ P
Sbjct: 179 DQLHP 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,022
Number of Sequences: 5004
Number of extensions: 61885
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)