Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11f01
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537 103 2e-22
04_01_0338 + 4424928-4425072,4425158-4425233,4425350-4425515,442... 73 3e-13
03_01_0337 + 2664648-2664670,2664752-2664838,2664930-2665095,266... 61 1e-09
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 51 1e-06
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 49 5e-06
04_01_0008 - 173220-173301,173398-173504,173813-173996,176113-17... 43 3e-04
07_03_0383 - 17476271-17479228,17480466-17480750 28 8.1
>11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537
Length = 208
Score = 103 bits (247), Expect = 2e-22
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 7/114 (6%)
Frame = -2
Query: 784 GPSMEPPLE-SNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVR-- 614
GPSM P + + +++ + +S RL ++ GD ++ SP NPR+ + KR+ G+ GD V
Sbjct: 83 GPSMLPAMNLAGDVVAVDLVSARLGRVASGDAVLLVSPENPRKAVVKRVVGMEGDAVTFL 142
Query: 613 ---GNFP-KRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPL 464
GN ++ VVP+GHVW++GDN S DSR +GPVP GLI ++ CRVWPL
Sbjct: 143 VDPGNSDASKTVVVPKGHVWVQGDNIYASRDSRQFGPVPYGLITGKIFCRVWPL 196
>04_01_0338 +
4424928-4425072,4425158-4425233,4425350-4425515,
4425669-4425791
Length = 169
Score = 72.9 bits (171), Expect = 3e-13
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = -2
Query: 808 YGDFVMCSGPSMEPPLES---NNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIK 638
Y + G SM P LES + L++ L RGD+++ +SP+ R + KR+
Sbjct: 29 YASVITVRGTSMNPTLESQQGDRALVSRLCLDARYGLSRGDVVVFRSPTEHRSLLVKRLI 88
Query: 637 GLPGDKVRGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLI 497
LPGD ++ + + +P GH W+EGDN S DSR YGP+ L+
Sbjct: 89 ALPGDWIQVPAAQEIRQIPVGHCWVEGDNPDVSWDSRSYGPLWCALV 135
>03_01_0337 +
2664648-2664670,2664752-2664838,2664930-2665095,
2665817-2665891,2666931-2667038
Length = 152
Score = 60.9 bits (141), Expect = 1e-09
Identities = 30/88 (34%), Positives = 49/88 (55%)
Frame = -2
Query: 763 LESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPKRSQVV 584
LE ++L E + + GD+++ K PS+ R+ KR+ LPG+ ++ +
Sbjct: 10 LELGAVVLAERSCLQKYQFSHGDVVLFKCPSDHRELFVKRLIALPGEWMQLPGTPDIIKI 69
Query: 583 PRGHVWLEGDNSSNSADSRIYGPVPAGL 500
P GH W+EGDN++ S DSR +GP G+
Sbjct: 70 PEGHCWVEGDNAACSWDSRSFGPEVDGI 97
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = -2
Query: 610 NFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDKIT 452
N+ +VP G+V++ GDN +NS DS +GP+P I R V R WP +IT
Sbjct: 343 NYEMEPMLVPEGYVFVLGDNRNNSFDSHNWGPLPVRNIIGRSVFRYWPPSRIT 395
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 48.8 bits (111), Expect = 5e-06
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Frame = -2
Query: 778 SMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRG---- 611
SM P + + ++ E ++ +K DI+I KSP P + K + +VR
Sbjct: 139 SMFPTFDVGDRIVAEKVTYYFRKPCINDIVIFKSP--PVLQEVHKGKLVVNGEVRNEEFI 196
Query: 610 ----NFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDKITS 449
++ VP V++ GDN +NS DS ++GP+P+ I R + R WP +I S
Sbjct: 197 LEPPSYDMNPVQVPENSVFVMGDNRNNSYDSHVWGPLPSKNILGRSIFRYWPPGRIGS 254
>04_01_0008 -
173220-173301,173398-173504,173813-173996,176113-176288,
176612-176683
Length = 206
Score = 43.2 bits (97), Expect = 3e-04
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = -2
Query: 700 GDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPKRSQ-VVPRGHVWLEGDNSS----NSA 536
GD+++ K P I +R+ L G ++ N K V+ + W+ DN S +
Sbjct: 88 GDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDEKDEPFVLDKDQCWVLADNQSLKPKEAR 147
Query: 535 DSRIYGPVPAGLIRSRVV 482
DSR++GPVP I RV+
Sbjct: 148 DSRLFGPVPMTDILGRVI 165
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 606 KLPLTLSPGSPFILLHIFCLGFDGLLAMIISPRLSFWS 719
+LP L P PF+L + +G + LL S ++WS
Sbjct: 937 ELPQWLQPQQPFVLKRLDIIGTEELLDKCSSASSTYWS 974
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,150,639
Number of Sequences: 37544
Number of extensions: 354163
Number of successful extensions: 787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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