Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f01
         (845 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-8|CAJ14149.1|  247|Anopheles gambiae putative signal pe...    99   2e-22
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    24   5.1  
AY724802-1|AAW50311.1|  134|Anopheles gambiae G protein alpha su...    24   6.7  
AY724801-1|AAW50310.1|  134|Anopheles gambiae G protein alpha su...    24   6.7  

>CR954256-8|CAJ14149.1|  247|Anopheles gambiae putative signal
           peptidase protein.
          Length = 247

 Score = 98.7 bits (235), Expect = 2e-22
 Identities = 41/63 (65%), Positives = 54/63 (85%)
 Frame = -2

Query: 805 GDFVMCSGPSMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPG 626
           GDFV+C GPSMEP L +NN+L+T+ I+PRL KL+RGDIII KSP+ P Q++CKRI G+PG
Sbjct: 30  GDFVVCVGPSMEPTLMTNNVLITDRITPRLAKLQRGDIIITKSPTKPVQHVCKRIIGMPG 89

Query: 625 DKV 617
           D++
Sbjct: 90  DRI 92



 Score = 79.4 bits (187), Expect = 1e-16
 Identities = 30/44 (68%), Positives = 38/44 (86%)
 Frame = -2

Query: 589 VVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDK 458
           +VPRGH+W+EGDN  NS+DSR YGPVP GL++SR VCR+WPL +
Sbjct: 199 IVPRGHLWIEGDNVQNSSDSRNYGPVPIGLVKSRAVCRLWPLSE 242



 Score = 33.1 bits (72), Expect = 0.011
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 843 QYACITHCTFEYM 805
           QY CITHCTFEY+
Sbjct: 17  QYGCITHCTFEYL 29


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
            topoisomerase protein.
          Length = 1039

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -2

Query: 682  KSPSNPRQNICKRIKGL-PGDKVRGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPA 506
            K  S+   N  KR K + PG+K     P  +   P       G   + +A S   GPVPA
Sbjct: 975  KKSSHSGTNSSKRKKTVSPGEKKDRGGPMAAGGPPSATAISYGLTMAGAAGSVSNGPVPA 1034

Query: 505  GL 500
             L
Sbjct: 1035 SL 1036


>AY724802-1|AAW50311.1|  134|Anopheles gambiae G protein alpha
           subunit AgOn protein.
          Length = 134

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 1   ITKQSPRISRSQFYPLDIKKYSVAVFANT 87
           I KQ   I  S F   D K+Y   V++NT
Sbjct: 36  IVKQMKIIHESGFTSEDFKQYRPVVYSNT 64


>AY724801-1|AAW50310.1|  134|Anopheles gambiae G protein alpha
           subunit AgOa protein.
          Length = 134

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 1   ITKQSPRISRSQFYPLDIKKYSVAVFANT 87
           I KQ   I  S F   D K+Y   V++NT
Sbjct: 36  IVKQMKIIHESGFTSEDFKQYRPVVYSNT 64


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,761
Number of Sequences: 2352
Number of extensions: 15059
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89718867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)