Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f01
         (845 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC023595-1|AAH23595.1|  166|Homo sapiens IMMP1L protein protein.      147   5e-35
AK057788-1|BAB71573.1|  166|Homo sapiens protein ( Homo sapiens ...   147   5e-35
AL133295-1|CAC39221.1|  144|Homo sapiens dJ1137O17.1 (similar to...   136   7e-32
AF359563-1|AAK52905.1|  175|Homo sapiens inner mitochondrial mem...    89   1e-17
BC008497-1|AAH08497.1|  110|Homo sapiens IMMP2L protein protein.       48   6e-05
AC005161-1|AAS07432.1|   34|Homo sapiens unknown protein.              40   0.011

>BC023595-1|AAH23595.1|  166|Homo sapiens IMMP1L protein protein.
          Length = 166

 Score =  147 bits (356), Expect = 5e-35
 Identities = 67/126 (53%), Positives = 87/126 (69%), Gaps = 4/126 (3%)
 Frame = -2

Query: 805 GDFVMCSGPSMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPG 626
           G  VMCSGPSMEP +++++I+  E++S     ++RGDI+IAKSPS+P+ NICKR+ GL G
Sbjct: 31  GGVVMCSGPSMEPTIQNSDIVFAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEG 90

Query: 625 DKV----RGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDK 458
           DK+      +F K    VP GHVWLEGDN  NS DSR YGP+P GLIR R+  ++WPL  
Sbjct: 91  DKILTTSPSDFFKSHSYVPMGHVWLEGDNLQNSTDSRCYGPIPYGLIRGRIFFKIWPLSD 150

Query: 457 ITSLAA 440
              L A
Sbjct: 151 FGFLRA 156


>AK057788-1|BAB71573.1|  166|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25059 fis, clone CBL04610. ).
          Length = 166

 Score =  147 bits (356), Expect = 5e-35
 Identities = 67/126 (53%), Positives = 87/126 (69%), Gaps = 4/126 (3%)
 Frame = -2

Query: 805 GDFVMCSGPSMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPG 626
           G  VMCSGPSMEP +++++I+  E++S     ++RGDI+IAKSPS+P+ NICKR+ GL G
Sbjct: 31  GGVVMCSGPSMEPTIQNSDIVFAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEG 90

Query: 625 DKV----RGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDK 458
           DK+      +F K    VP GHVWLEGDN  NS DSR YGP+P GLIR R+  ++WPL  
Sbjct: 91  DKILTTSPSDFFKSHSYVPMGHVWLEGDNLQNSTDSRCYGPIPYGLIRGRIFFKIWPLSD 150

Query: 457 ITSLAA 440
              L A
Sbjct: 151 FGFLRA 156


>AL133295-1|CAC39221.1|  144|Homo sapiens dJ1137O17.1 (similar to
           putative mitochondrial inner membrane protease subnunit
           protein.
          Length = 144

 Score =  136 bits (330), Expect = 7e-32
 Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 4/111 (3%)
 Frame = -2

Query: 805 GDFVMCSGPSMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPG 626
           G  VMCSGPSMEP +++++I+  E++S     ++RGDI+IAKSPS+P+ NICKR+ GL G
Sbjct: 31  GGVVMCSGPSMEPTIQNSDIVFAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEG 90

Query: 625 DKV----RGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRV 485
           DK+      +F K    VP GHVWLEGDN  NS DSR YGP+P GLIR R+
Sbjct: 91  DKILTTSPSDFFKSHSYVPMGHVWLEGDNLQNSTDSRCYGPIPYGLIRGRI 141


>AF359563-1|AAK52905.1|  175|Homo sapiens inner mitochondrial
           membrane peptidase 2 protein.
          Length = 175

 Score = 89.4 bits (212), Expect = 1e-17
 Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
 Frame = -2

Query: 784 GPSMEPPL-----ESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDK 620
           G SM+P L     +S++++L  H   R  ++ RGDI+   SP NP Q I KR+  L GD 
Sbjct: 41  GASMQPSLNPGGSQSSDVVLLNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDI 100

Query: 619 VRGNFPKRSQV-VPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDK 458
           VR    K   V VPRGH+W+EGD+  +S DS  +GPV  GL+ +     +WP ++
Sbjct: 101 VRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPER 155


>BC008497-1|AAH08497.1|  110|Homo sapiens IMMP2L protein protein.
          Length = 110

 Score = 47.6 bits (108), Expect = 6e-05
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = -2

Query: 784 GPSMEPPL-----ESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDK 620
           G SM+P L     +S++++L  H   R  ++ RGDI+   SP NP Q I KR+  L GD 
Sbjct: 41  GASMQPSLNPGGSQSSDVVLLNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDI 100

Query: 619 VR 614
           VR
Sbjct: 101 VR 102


>AC005161-1|AAS07432.1|   34|Homo sapiens unknown protein.
          Length = 34

 Score = 39.9 bits (89), Expect = 0.011
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -2

Query: 586 VPRGHVWLEGDNSSNSADSRIYGP 515
           VPRGH+W+EGD+  +S DS  +GP
Sbjct: 11  VPRGHIWVEGDHHGHSFDSNSFGP 34


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,920,486
Number of Sequences: 237096
Number of extensions: 2158168
Number of successful extensions: 6558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6552
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)