Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f01
         (845 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2190|AAF48490.1|  166|Drosophila melanogaster CG9240-PA...   139   5e-33
AY071176-1|AAL48798.1|  166|Drosophila melanogaster RE22928p pro...   136   4e-32
BT023604-1|AAY85004.1|  171|Drosophila melanogaster IP06605p pro...    82   8e-16
AE013599-3051|AAF57438.1|  171|Drosophila melanogaster CG11110-P...    82   8e-16
BT029985-1|ABM92859.1|  207|Drosophila melanogaster RE30129p pro...    29   8.0  
AE014296-1145|AAF50649.2|  207|Drosophila melanogaster CG8519-PA...    29   8.0  

>AE014298-2190|AAF48490.1|  166|Drosophila melanogaster CG9240-PA
           protein.
          Length = 166

 Score =  139 bits (336), Expect = 5e-33
 Identities = 70/138 (50%), Positives = 88/138 (63%), Gaps = 18/138 (13%)
 Frame = -2

Query: 805 GDFVMCSGPSMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPG 626
           GDFV+C GPSMEP L S+N+LLTE +S   +  + GDI+IA SP    Q ICKRI  + G
Sbjct: 29  GDFVLCKGPSMEPTLHSDNVLLTERLSKHWRTYQPGDIVIAISPIKADQFICKRIVAVSG 88

Query: 625 DKV------------RGNFPKRSQ------VVPRGHVWLEGDNSSNSADSRIYGPVPAGL 500
           D+V             GN   + +       VPRGHVW+EGDN  NS+DSR YGP+P GL
Sbjct: 89  DQVLIQKPIPIEAEFSGNSDDKKKPVMVKDYVPRGHVWIEGDNKGNSSDSRYYGPIPVGL 148

Query: 499 IRSRVVCRVWPLDKITSL 446
           IRSRV+CR+WP+ + T L
Sbjct: 149 IRSRVLCRIWPISEATGL 166


>AY071176-1|AAL48798.1|  166|Drosophila melanogaster RE22928p
           protein.
          Length = 166

 Score =  136 bits (329), Expect = 4e-32
 Identities = 69/138 (50%), Positives = 87/138 (63%), Gaps = 18/138 (13%)
 Frame = -2

Query: 805 GDFVMCSGPSMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPG 626
           GDFV+C GPSMEP L S+N+ LTE +S   +  + GDI+IA SP    Q ICKRI  + G
Sbjct: 29  GDFVLCKGPSMEPTLHSDNVPLTERLSKHWRTYQPGDIVIAISPIKADQFICKRIVAVSG 88

Query: 625 DKV------------RGNFPKRSQ------VVPRGHVWLEGDNSSNSADSRIYGPVPAGL 500
           D+V             GN   + +       VPRGHVW+EGDN  NS+DSR YGP+P GL
Sbjct: 89  DQVLIQKPIPIEAEFSGNSDDKKKPVMVKDYVPRGHVWIEGDNKGNSSDSRYYGPIPVGL 148

Query: 499 IRSRVVCRVWPLDKITSL 446
           IRSRV+CR+WP+ + T L
Sbjct: 149 IRSRVLCRIWPISEATGL 166


>BT023604-1|AAY85004.1|  171|Drosophila melanogaster IP06605p
           protein.
          Length = 171

 Score = 82.2 bits (194), Expect = 8e-16
 Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
 Frame = -2

Query: 781 PSMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFP 602
           P++ P  +  + +          ++ RGDII   SP +P Q I KR+ GL GD V     
Sbjct: 37  PALNPVPDEKDYVFLLRWGTHNSQVERGDIISLISPKDPAQKIIKRVVGLQGDVVSTLGY 96

Query: 601 KRSQV-VPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDK 458
           K   V VP GH W+EGD++ +S DS  +GPV  GL+ +R V  VWP ++
Sbjct: 97  KHEIVRVPEGHCWVEGDHTGHSMDSNTFGPVALGLMSARAVAIVWPPER 145


>AE013599-3051|AAF57438.1|  171|Drosophila melanogaster CG11110-PA
           protein.
          Length = 171

 Score = 82.2 bits (194), Expect = 8e-16
 Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
 Frame = -2

Query: 781 PSMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFP 602
           P++ P  +  + +          ++ RGDII   SP +P Q I KR+ GL GD V     
Sbjct: 37  PALNPVPDEKDYVFLLRWGTHNSQVERGDIISLISPKDPAQKIIKRVVGLQGDVVSTLGY 96

Query: 601 KRSQV-VPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDK 458
           K   V VP GH W+EGD++ +S DS  +GPV  GL+ +R V  VWP ++
Sbjct: 97  KHEIVRVPEGHCWVEGDHTGHSMDSNTFGPVALGLMSARAVAIVWPPER 145


>BT029985-1|ABM92859.1|  207|Drosophila melanogaster RE30129p
           protein.
          Length = 207

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 314 LKLFILLLESYSSVVLIMPYSMNLYMTKYDHITEKIFKH 430
           LK+ ++   S     LI+ +    Y+ +YDH TE  +KH
Sbjct: 16  LKIAVIGAPSVGKSALIVRFLTKRYIGEYDHQTENRYKH 54


>AE014296-1145|AAF50649.2|  207|Drosophila melanogaster CG8519-PA
           protein.
          Length = 207

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 314 LKLFILLLESYSSVVLIMPYSMNLYMTKYDHITEKIFKH 430
           LK+ ++   S     LI+ +    Y+ +YDH TE  +KH
Sbjct: 16  LKIAVIGAPSVGKSALIVRFLTKRYIGEYDHQTENRYKH 54


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,227,745
Number of Sequences: 53049
Number of extensions: 628484
Number of successful extensions: 1215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4044853644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)