Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11f01
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81475-6|CAB03913.2|  132|Caenorhabditis elegans Hypothetical pr...   100   3e-21
AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical ...    61   1e-09
AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical ...    31   0.78 
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p...    28   9.6  

>Z81475-6|CAB03913.2|  132|Caenorhabditis elegans Hypothetical
           protein C24H11.6 protein.
          Length = 132

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 46/113 (40%), Positives = 69/113 (61%)
 Frame = -2

Query: 796 VMCSGPSMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKV 617
           V+CSGPSM P +   +++L E  S R + ++ GDI+   +P  P++ +CKRI    GD V
Sbjct: 2   VICSGPSMHPTIHDGDLVLAERFSIRNKNVQVGDIVGCVNPQKPKELLCKRIAAKEGDPV 61

Query: 616 RGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDK 458
             +     + VP GHV+L GDN   S DSR +GPVP  L++ R+  R+WP ++
Sbjct: 62  TSHLLPSGR-VPIGHVFLRGDNGPVSTDSRHFGPVPEALVQIRLSLRIWPPER 113


>AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.8 protein.
          Length = 152

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = -2

Query: 718 LQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNF-PKRSQVVPRGHVWLEGDNSSN 542
           L K   G I+   SP +P     KR+  +    VR    P+    +P+GH W+EGDN  +
Sbjct: 59  LYKCSPGTILTFVSPRDPDAVHIKRVTAVENAIVRPEKRPELITDIPKGHYWMEGDNPEH 118

Query: 541 SADSRIYGPVPAGLIRSRVVCRVWP 467
             DS +YGPV   L++ R    +WP
Sbjct: 119 RHDSNVYGPVSTSLVKGRATHIIWP 143


>AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A1.8 protein.
          Length = 450

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -2

Query: 778 SMEPPLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPK 599
           SM   L     L  E ++P ++K+R  ++I+    S P + IC+ +      KV  NF +
Sbjct: 316 SMIKGLVGEKKLSAEDLNPLIEKMRE-NLILKNVASEPAEKICQSVVSKLEGKVVNNFSR 374

Query: 598 RSQVV 584
            +Q V
Sbjct: 375 VAQEV 379


>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical
           protein F21G4.2 protein.
          Length = 1573

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 544 NSADSRIYGPVPAGLIRSRVVCRVWPLDKITSLAA**NMFKYFFCDVIIFCH 389
           N   +  YG VPAG    ++   +W L  +        MF     DV++FC+
Sbjct: 308 NDQSTDDYGSVPAGQSTQKMPSIIWTLFLMFKWDVITAMFVKLLSDVLLFCN 359


>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
           protein F21G4.2 protein.
          Length = 1573

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 544 NSADSRIYGPVPAGLIRSRVVCRVWPLDKITSLAA**NMFKYFFCDVIIFCH 389
           N   +  YG VPAG    ++   +W L  +        MF     DV++FC+
Sbjct: 308 NDQSTDDYGSVPAGQSTQKMPSIIWTLFLMFKWDVITAMFVKLLSDVLLFCN 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,542,401
Number of Sequences: 27780
Number of extensions: 342560
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)