Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e22
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.57
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 29 0.75
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.99
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 4.0
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 5.3
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 5.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.0
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 26 7.0
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 25 9.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.3
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 9.3
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.3
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.57
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 4/145 (2%)
Frame = -3
Query: 627 YDNRGQPVAVAPANDSSPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTK 448
Y + + +P+ + S S ++ + T T A+ I + +SF +T+
Sbjct: 189 YTSASSTILSSPSVEQS--TPSIITQTESSTTTEGSSVASSESTIANSDQSSFITYESTQ 246
Query: 447 NINSNNNGQDGTKCIVTVITKTAKEYMTTI-PCSVLLNTAAENNV-TEAP--IVENEKVE 280
N +N T + +A Y+TT+ + T +EN T P N +
Sbjct: 247 NPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQ 306
Query: 279 IDTINSTTSPFSDDPNQAVALKLTT 205
I + S++S + P+ A++ TT
Sbjct: 307 ISSTISSSSFIVESPSVALSTSSTT 331
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 29.1 bits (62), Expect = 0.75
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 612 QPVAVAPANDSSPANDSFLSDLVNCTLTISGEKATEVLAI 493
QP + N SSP + LS L NCT + K + V I
Sbjct: 134 QPGDILAVNHSSPLDVLVLSCLYNCTFAVCDSKTSNVSII 173
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 28.7 bits (61), Expect = 0.99
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = -3
Query: 585 DSSPANDSFLSDLVNCTLTISGEK-ATEVLAIPCAIATSFSPDANTKNINSNNNGQDGTK 409
DS+ SF SD + EK A++V + IATS S D KNI N + K
Sbjct: 23 DSTDTESSF-SDADSSEEEFVEEKEASQVQSTKSKIATSESEDVTLKNIAKKNKRERNDK 81
Query: 408 CIVTVITKT---AKEYMTTIPCSVLLNTAAENNVTEA 307
I ++ K +T + N AE+N + A
Sbjct: 82 LIPQQSNESEAIEKPVQSTTEVELKTNELAESNSSVA 118
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 362 VVIYSFAVFVITVTIHFVPSCPLLFEFIF 448
V +Y+ + I +++PSCP L++ F
Sbjct: 285 VALYTNLLLAIVFVYNYLPSCPSLYDLFF 313
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 139 RSNQSVFCC*SESHSYS-NFYYLGHRCSQVKFVTNGILCRLCLF*PI 2
R + V C E Y+ F R +Q+K++T+G+L R CL P+
Sbjct: 575 RVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVDPL 621
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 646 ISSRSSQVPEC*SSKKSSYPGSCNPNTCKRTSCATNPTKPST 771
+SS+ + P S SS P + N + +S NP P T
Sbjct: 199 VSSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAPQT 240
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 339 NTAAENNVTEAPIVENEKVEIDTINSTTSPFSDDPNQAV 223
NTAAE+ + + E V T+ S+ + +PN+ +
Sbjct: 445 NTAAESLINQEETTSGEAVTKSTVESSANEEEAEPNEII 483
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -3
Query: 582 SSPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKNINSN 433
+SPA+ SF++ LV+ + S + + + A TS S + T + +S+
Sbjct: 72 TSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSH 121
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -3
Query: 672 WNLARSTGNRHHTVIYDNRGQPVAVAPANDSSP-ANDSFLSDLVNCTLTISGEKATEVLA 496
W + R + ++ DN GQ V + +N D+++ DL+ C I+ + +
Sbjct: 288 WQVGRLAAVNSNFLVLDNNGQRVKILYSNSQKHYFKDTYIGDLL-CISPIN-HSSDNLSD 345
Query: 495 IPCAIATSFSPDANTKNINSNN 430
C T+ +N +N S+N
Sbjct: 346 YSCVSDTTTEILSNLENPLSSN 367
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 405 IVTVITKTAKEYMTTIPCSVLLN 337
++T + TA YM P S LLN
Sbjct: 353 LITTVAVTASRYMNVFPLSNLLN 375
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 9.3
Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = -3
Query: 459 ANTKNINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEAPI-VENEKV 283
ANT+++N+++ G D K +I+ + K + +IP + + + + +++T+ + N V
Sbjct: 335 ANTESVNASDEGSD--KSQKGIISDSPK--LLSIPLNNVPSKSLNDDITQDELNSSNADV 390
Query: 282 EIDTINSTTSPFSDDPNQAVALKLTTEGN 196
+ + I +T+ + NQ + + GN
Sbjct: 391 DEEVIETTSLEEKNVDNQEFVTSI-SNGN 418
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 9.3
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Frame = -3
Query: 507 EVLAIPCAIATSFSPDANTKNINSNNNGQDGTKCIVTVIT------KTAKEYMTTIPCSV 346
E IP + T+ +P T I T + +IT T E TTI
Sbjct: 97 ETTTIP-TVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155
Query: 345 LLNTAAENNVTEAPIVENEKVEIDTINSTTSP 250
+ T E T P+VE I T+ + T+P
Sbjct: 156 AMTTPMEETTTTTPMVET--TTIPTVETMTTP 185
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 425 PLLFEFIFLVLASGENDVAIAHGIASTSVAFSPLIVKVQLTKSDKNESFAGEE 583
P +F F + G+N + + I + S S + L KSD+N SF E+
Sbjct: 117 PEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSFTDED 169
>SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 81
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 513 ATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 412
A +A+ A S +P NT N NG +GT
Sbjct: 10 AIVTMALAVQAANSTAPYGNTTNSTGTTNGTNGT 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,415
Number of Sequences: 5004
Number of extensions: 62420
Number of successful extensions: 200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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