Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e22
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420           31   1.4  
03_06_0632 + 35196608-35197087,35198205-35198424,35198521-35198807     31   1.4  
12_01_0058 - 493758-494114                                             30   2.4  
01_01_0381 - 2961422-2963917                                           29   4.2  
12_02_0349 - 17820352-17821238,17822976-17823363                       28   7.3  
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987...    28   7.3  
11_04_0462 - 17970780-17970806,17970849-17971049,17971151-179712...    28   7.3  
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785...    28   7.3  

>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
          Length = 1407

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 304 RCLSNIIFCCRI*QYGTWDSRHILLCCLC 390
           +C+  +I   RI +YG  D    LLCCLC
Sbjct: 768 QCVEGLISVARIARYGLEDVLDELLCCLC 796


>03_06_0632 + 35196608-35197087,35198205-35198424,35198521-35198807
          Length = 328

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 461 SGENDVAIAHGIASTSVAFSPLIVKVQLTKSDKNESFAGEESFAGATATGCP 616
           S   + A+AHG  S  + F P+++ V    SD +  F+GE+   GA     P
Sbjct: 74  SSSPENALAHGYISWKLDFPPVLILVASCPSD-HVGFSGEQPIQGARIQVAP 124


>12_01_0058 - 493758-494114
          Length = 118

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 619 VIINNGVMAISSRSSQVPEC*SSKKSSYPGSCNPNTCKRTSCATNP 756
           V+I   V+++ +       C S   + YPGSC P     + C T+P
Sbjct: 36  VVITAIVVSLEAPEDVPHGCSSIVSALYPGSCRPEAIAYSCCFTSP 81


>01_01_0381 - 2961422-2963917
          Length = 831

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 591 ANDSSPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKNINSNNN 427
           AN   P  D+  +D  +  LTISG+    V   P   + ++S + + KN  SN+N
Sbjct: 82  ANGGEPIMDA--ADAGSPELTISGDDGDLVALHPTTKSIAWSTNVSAKNSTSNSN 134


>12_02_0349 - 17820352-17821238,17822976-17823363
          Length = 424

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 255 SPFSDDPNQAVALKLTTEGNYGG 187
           S FS  P+ A  LKL TEGN GG
Sbjct: 327 SVFSSSPDLANLLKLYTEGNGGG 349


>11_06_0249 +
           21697863-21697923,21698119-21698128,21698160-21698766,
           21699011-21699090,21699182-21699263,21699357-21699428,
           21700128-21700406
          Length = 396

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = -3

Query: 579 SPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPD-ANTKNINSNNNGQ--DGTK 409
           SP  ++  SD  + T     ++A +        AT   PD +N K    N NG      K
Sbjct: 156 SPMAETAGSDSTSVTSMEDVQEAKDAAPSETDDATGHPPDLSNDKACAGNGNGNVFQNAK 215

Query: 408 CIVTVITKTAK 376
           C++T  TK  K
Sbjct: 216 CVLTTSTKKMK 226


>11_04_0462 -
           17970780-17970806,17970849-17971049,17971151-17971293,
           17971294-17971363,17971455-17971535,17971644-17971784,
           17972349-17972453,17972619-17972669
          Length = 272

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 564 SFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPD--ANTKNINSNNN 427
           S L DL+ C + +S ++ATE   + C I  S S +  A+  +   NN+
Sbjct: 107 SLLHDLIPCLVCLSAKRATET-ELVCFILKSISDNRIAHVSHFGGNNH 153


>01_07_0084 +
           40976976-40977164,40978174-40978201,40978445-40978575,
           40978941-40979434,40979516-40979609,40979686-40979779,
           40980342-40980444,40980550-40980601,40980716-40980756,
           40980881-40980960,40981490-40981936,40982378-40982554,
           40983205-40983803,40983886-40985040
          Length = 1227

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 203 KETMEVSARITLTVHQNTVLFEIQSIRVLLLIRISQ 96
           KET E+SA   +TV Q    F  Q  RV   +R+S+
Sbjct: 101 KETREISASFGVTVTQVREFFASQRTRVRKFVRLSR 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,233,777
Number of Sequences: 37544
Number of extensions: 368966
Number of successful extensions: 1099
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)