Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e20
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0190 - 1404374-1404402,1404491-1404558,1404830-1404967,140... 29 2.2
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149... 28 2.9
09_02_0609 - 11197630-11197977,11198631-11198702 27 5.1
02_01_0398 - 2899311-2899454,2900679-2900807,2900927-2900998,290... 27 5.1
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348... 27 6.7
04_04_0229 - 23766488-23766946,23767901-23768128 27 6.7
03_02_0372 + 7864015-7864065,7864167-7864208,7864292-7864322,786... 27 6.7
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 27 8.8
>12_01_0190 -
1404374-1404402,1404491-1404558,1404830-1404967,
1405414-1405465,1405570-1405669,1406938-1407088,
1407212-1407311,1407471-1407585,1407786-1407950,
1408050-1408105,1408199-1408256
Length = 343
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 228 PAISSSKVRASIISDTSLQSVVFESFRDLVF 320
PA++ + A ++ TSL S + ESF+ ++F
Sbjct: 59 PAVTEAAEPAEVVPRTSLASTIAESFKQMLF 89
>11_01_0189 -
1493618-1493637,1493728-1493795,1494070-1494207,
1494647-1494698,1494803-1494902,1495606-1495681,
1495757-1495844,1496248-1496342,1496506-1496605,
1496765-1496879,1497077-1497241,1497362-1497547
Length = 400
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 228 PAISSSKVRASIISDTSLQSVVFESFRDLVF 320
PA + + A I+ TSL S + ESF+ ++F
Sbjct: 83 PAATEAAEPAEIVPRTSLASTIAESFKQMIF 113
>09_02_0609 - 11197630-11197977,11198631-11198702
Length = 139
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 331 KCPPKTKSRKLSKTTDCKDVSEIIEALTLDEEMAGK 224
+ PP RK + DC S +I L + E++GK
Sbjct: 43 RAPPHADDRKNDDSGDCDGDSGVIAILPVSREVSGK 78
>02_01_0398 -
2899311-2899454,2900679-2900807,2900927-2900998,
2901667-2901790,2901835-2901882,2902145-2902197,
2902932-2903030,2903141-2903539
Length = 355
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 334 KKCPPKTKSRKLSKTTDCKDVSEIIEALTLDE 239
KK +SRKL++ DC +S I +A LD+
Sbjct: 314 KKLDGFLESRKLNEGLDCDTISRICQAYDLDK 345
>07_01_0460 +
3486040-3486758,3486804-3486876,3487067-3487132,
3488090-3488251,3488427-3488457,3488767-3489206
Length = 496
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 136 PSMHTRLRYIGHCSLEPSVPKNRL*FQYIQSSLTYTYVFIYYS 8
P ++ L Y G S+ P + ++ L QYI ++ +V IYYS
Sbjct: 371 PHLYGWLMYFGLFSMYPLICRDHLLLQYI--AVLGLFVLIYYS 411
>04_04_0229 - 23766488-23766946,23767901-23768128
Length = 228
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 25 HRYKLKTIVYTEIITCFLVQKAPENNVQYTVVSYASKEPLE 147
H YK K ++Y +I+T L K + V V SY +E LE
Sbjct: 85 HWYKPKLLLYVDIVT-VLASKGLRSEVD-KVCSYLKREQLE 123
>03_02_0372 +
7864015-7864065,7864167-7864208,7864292-7864322,
7864472-7864653
Length = 101
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 78 GTEGSREQCPIYRSLVCIEG 137
GT G++E+CP Y +L +G
Sbjct: 77 GTSGNKEECPCYNNLKSSQG 96
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 137 SFDAYETTVYWTLFSGAFCTKKQVIISVYTIVFNLYL 27
S++ ++ + W + S A ++S+ TIVFNLYL
Sbjct: 157 SYEVFKVSDRWDI-SSATANTNLWMLSLETIVFNLYL 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,859,177
Number of Sequences: 37544
Number of extensions: 199067
Number of successful extensions: 400
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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