Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e19
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   2.9  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    27   3.9  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   6.7  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 319 ISSSNRNNNASETNPEAVCCWST 251
           I+  N N N +E  P+ +CC ST
Sbjct: 50  INRENENENENEDLPKQLCCMST 72


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 460 NVSLILYKMHVSVGQ*IQX-FTHNFDTAITAIPRLSANSAHNPL 588
           +++ +L  MH SV   +    TH +D+   ++ RL+A   H P+
Sbjct: 63  DLNFLLENMHASVFPTVDVRITHGYDSKSDSLARLTAQMNHCPV 106


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 29  RSSLLNTLKAKDACYKPFTASHAQTTSL 112
           ++ LL+T   ++ACY   TAS  Q + L
Sbjct: 460 QAELLSTKMRQEACYLQLTASRTQCSDL 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,275
Number of Sequences: 5004
Number of extensions: 36389
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)