Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11e19
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    30   2.3  
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802...    29   4.0  

>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 55  SKRCLLQTFYSKSCSNYKFKGNAHKGGQGVTDKNLDELE 171
           + +CL Q F SK  +     GN HKGGQ + +K+   +E
Sbjct: 414 TSQCLTQAFLSKCIA-----GNQHKGGQVLAEKSTGSVE 447


>11_02_0073 -
           8020401-8020512,8020594-8020679,8020761-8020921,
           8021196-8021400,8021664-8021697,8022352-8022422,
           8023363-8023542,8023625-8023765,8023859-8023975,
           8024074-8024469
          Length = 500

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 47  TLKAKDACYKPFTASHAQTTSLKAMHTKEGRGLPIRT*TSSKQHR 181
           T + K   +  FTA  A   +++ +H KE +G  +R   S  +HR
Sbjct: 141 TKENKGFAFVNFTAKEAAQRAIEELHDKEHKGRTLRCSLSQAKHR 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,503,333
Number of Sequences: 37544
Number of extensions: 222754
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)