Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e19
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42830-2|AAC48274.1| 243|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z78539-2|CAB01729.2| 410|Caenorhabditis elegans Hypothetical pr... 30 2.1
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 30 2.1
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 29 4.8
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 29 4.8
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 4.8
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z70781-7|CAJ55254.1| 380|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z70781-6|CAA94831.2| 349|Caenorhabditis elegans Hypothetical pr... 28 6.3
>U42830-2|AAC48274.1| 243|Caenorhabditis elegans Hypothetical
protein C53B7.3 protein.
Length = 243
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 364 Y*CKRVDIVSKMCAQISSSNR--NNNASETNPEAVCCWSTDCTNICICLTGRC 212
Y C+ + Q S SN N+N+ +N + C +STDC + +C G C
Sbjct: 93 YSCRSGETCMNNRCQSSYSNNMYNSNSQYSNSGSTCRYSTDCYSGQMCSNGVC 145
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
protein ZC84.1 protein.
Length = 1556
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 268 VCCWSTDCTNICICLTGRCCSLACMLLQSSMLF 170
VC ++TDC + C TG C L+ +L+ S +
Sbjct: 107 VCQYNTDCLSGMYCATGLCSCLSTYILRESYCY 139
>Z78539-2|CAB01729.2| 410|Caenorhabditis elegans Hypothetical
protein C31E10.3 protein.
Length = 410
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 295 NASETNPEAVCCWSTDCTNICICLT 221
N SE E + W T+CT +C LT
Sbjct: 37 NKSEVTTETIELWPTNCTKVCSILT 61
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 310 SNRNNNASETNPEAVCCWSTDCTNICICLTGRC 212
++R N S + P+ C + ++CT IC+ RC
Sbjct: 1939 NDRYNVRSRSYPKTFCTFDSECTGGSICIDKRC 1971
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 265 CCWSTDCTNICICLTGRCCSLAC 197
CC + CT C C CC C
Sbjct: 103 CCRTCCCTRCCTCCRPCCCGCGC 125
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 265 CCWSTDCTNICICLTGRCCSLAC 197
CC + CT C C CC C
Sbjct: 85 CCRTCCCTRCCTCCRPCCCGCGC 107
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 265 CCWSTDCTNICICLTGRCCSLAC 197
CC + CT C C CC C
Sbjct: 101 CCRTCCCTRCCTCCRPCCCGCGC 123
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 265 CCWSTDCTNICICLTGRCCSLAC 197
CC + CT C C CC C
Sbjct: 87 CCRTCCCTRCCTCCRPCCCGCGC 109
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 265 CCWSTDCTNICICLTGRCCSLAC 197
CC + CT C C CC C
Sbjct: 90 CCRTCCCTRCCTCCRPCCCGCGC 112
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 265 CCWSTDCTNICICLTGRCCSLAC 197
CC + CT C C CC C
Sbjct: 102 CCRTCCCTRCCTCCRPCCCGCGC 124
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 265 CCWSTDCTNICICLTGRCCSLAC 197
CC + CT C C CC C
Sbjct: 102 CCRTCCCTRCCTCCRPCCCGCGC 124
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 265 CCWSTDCTNICICLTGRCCSLAC 197
CC + CT C C CC C
Sbjct: 103 CCRTCCCTRCCTCCRPCCCGCGC 125
>Z70781-7|CAJ55254.1| 380|Caenorhabditis elegans Hypothetical
protein F57A8.2b protein.
Length = 380
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 7 W*LIHXVTIFSSKYIESKRCLLQTFYSKSCSNYKF 111
W ++ + IF SKYI + L ++S + S YKF
Sbjct: 215 WVILENIVIFISKYILNISQSLSVWHSLAYSTYKF 249
>Z70781-6|CAA94831.2| 349|Caenorhabditis elegans Hypothetical
protein F57A8.2a protein.
Length = 349
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 7 W*LIHXVTIFSSKYIESKRCLLQTFYSKSCSNYKF 111
W ++ + IF SKYI + L ++S + S YKF
Sbjct: 215 WVILENIVIFISKYILNISQSLSVWHSLAYSTYKF 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,251
Number of Sequences: 27780
Number of extensions: 210807
Number of successful extensions: 620
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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