Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e18
(356 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 29 0.21
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 28 0.49
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 0.65
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 26 2.0
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 2.6
SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|c... 25 2.6
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 3.5
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 25 4.6
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 25 4.6
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 24 6.1
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 24 6.1
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 24 6.1
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 24 8.0
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 24 8.0
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 24 8.0
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 24 8.0
>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 339
Score = 29.1 bits (62), Expect = 0.21
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 158 FNFFPQFLNCFLRTLSQRI*AIVFFRSISF-DECMHIGEADSQQDNQQLVHFGYLRTSSR 334
F+ + Q + CF+R +S S+ + E + IG ++++N + + + +
Sbjct: 130 FHIYSQLIMCFIREMSFENAEETLNASLPYKSEIIGIGLDSNEENNPPIKFLKVFQRARQ 189
Query: 335 IGYRIT 352
+GYR+T
Sbjct: 190 LGYRLT 195
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.9 bits (59), Expect = 0.49
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 262 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 116
V A +K+D +E S L TIE+L+ K E+ P K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.5 bits (58), Expect = 0.65
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 144 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 314
G A + F ++ SIV+ A+ ++V + + A ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 2.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 174 NSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 302
N S+ F L A+ + S +N C LA+++ ++SSL
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 232 KEDNSLNTLAESAKKTIEELREKVESAL 149
KE NS++ L+ S +KTIE R + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398
>SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 2.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 1 LHSIYLGLWYLDTKKLLLRLSVLPRASDFY-KIR*SCLPSC 120
LHSI + L T +L+L++LP A Y +R P+C
Sbjct: 16 LHSITQPITLLKTMHYVLQLTILPSAMQHYATLRNFTHPAC 56
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.0 bits (52), Expect = 3.5
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -2
Query: 256 AFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEF 92
+ K + EDN AE ++T + ++++ +A ET K+F +D F +
Sbjct: 51 SLAKTEILHEDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSFSLDLDKFGGY 105
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 24.6 bits (51), Expect = 4.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 235 PKEDNSLNTLAESAKKTIEELREKVESA 152
PKED +T+ E +K I EKV+ A
Sbjct: 65 PKEDALYSTIREEYQKAINIQNEKVQLA 92
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 4.6
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = -2
Query: 250 VKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK-------NFGTMVDSFNEF 92
+K+ P E ++ T E + E+ + ++ + + N+ + F+EF
Sbjct: 13 MKKKKPNESSNRITFTEDDSSSSEQEHAPIPNSFSSQITAASDASKDDNYDASIYGFDEF 72
Query: 91 YKNLKPAE 68
Y ++K AE
Sbjct: 73 YDSMKSAE 80
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 6.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 253 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLK 77
FVK + SLN + +++ K +E +KV P K F V+ +Y NLK
Sbjct: 156 FVKLEEKHYSPSLNAMEQTSPKEEDEKSDKV-----PRVDKVCFTCGVNCSQTWYHNLK 209
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 24.2 bits (50), Expect = 6.1
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 196 AKKTIEELREKVESALAPETVK-KNFGTMVDSFNEFYKNL 80
A+K IEE E E A A E ++ +NF T V+ E +K L
Sbjct: 418 AEKAIEEAAE-AERAEADERLRLENFSTWVNEKRETHKIL 456
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 344 CSRFVKTFSNIQNEQAADYLVGYLPRQC 261
C ++F N+ +D LVG+LPR C
Sbjct: 597 CVSNYRSFINVTAR--SDVLVGFLPRSC 622
>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 259 HAFVKRDAPKEDNSLNTLAESAKKTIEELREKVES 155
H F ++ E + L+ + KKTIE +++V+S
Sbjct: 172 HPFSQQLEQDEADKLDFAIQEVKKTIEMYKQQVQS 206
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 23.8 bits (49), Expect = 8.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 114 IVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLT 251
++ KF+ K DS+F + +VF ++ V R+ + AS ++
Sbjct: 185 LLSKFYSKFHHKKEDSSFDPLAPLVFAPNTSRVLRVTNEANASAIS 230
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 23.8 bits (49), Expect = 8.0
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 1 LHSIYLGLWYLDTKKLLL 54
LH++Y+G +L+ KKL+L
Sbjct: 151 LHNMYMGSTHLNFKKLVL 168
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 234 LKKTIA*IRWLRVRRKQLRN*GKKLNPPWPRRLLRKTLARW 112
+ K++A + W R +++ PP+P + TLA+W
Sbjct: 28 VSKSMANVLWARYASTRIKT------PPFPESITEGTLAQW 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,619
Number of Sequences: 5004
Number of extensions: 26841
Number of successful extensions: 98
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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