Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11e16
(708 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52077-1|AAC52010.1| 343|Homo sapiens mariner transposase protein. 46 2e-04
U80776-1|AAC52012.1| 671|Homo sapiens unknown protein. 42 0.003
DQ341316-1|ABC72087.1| 344|Homo sapiens SETMAR protein. 42 0.003
BC008931-1|AAH08931.2| 429|Homo sapiens SETMAR protein protein. 42 0.003
AY952295-1|AAY29570.1| 671|Homo sapiens metnase protein. 42 0.003
AK222734-1|BAD96454.1| 671|Homo sapiens SET domain and mariner ... 42 0.003
AF054989-1|AAC09350.1| 671|Homo sapiens unknown protein. 42 0.003
>U52077-1|AAC52010.1| 343|Homo sapiens mariner transposase protein.
Length = 343
Score = 45.6 bits (103), Expect = 2e-04
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = -1
Query: 462 SSACLIHHSFLPNGTGVSTDV*L*RTGYNDGEARESPASFD*SLVS----V*MHDNAGPX 295
S+A LIH+SFL G ++++ + E +LV+ + +HDNA P
Sbjct: 197 SAAGLIHYSFLNPGETITSE----KYAQQIDEMHRKLQRLQPALVNRKGPILLHDNARPH 252
Query: 294 XXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
+ LPHP YSP+L+ Y F + LD+F GK+
Sbjct: 253 VAQPTLQKLNELGYEVLPHPPYSPDLSPTDYHFFKHLDNFLQGKR 297
Score = 30.7 bits (66), Expect = 5.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 86 KIPLRWQRCIDSMGAYFD 33
K+ RWQ+C+D G+YFD
Sbjct: 326 KLISRWQKCVDCNGSYFD 343
>U80776-1|AAC52012.1| 671|Homo sapiens unknown protein.
Length = 671
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = -1
Query: 462 SSACLIHHSFLPNGTGVSTDV*L*RTGYNDGEARESPASFD*SLVS----V*MHDNAGPX 295
S+A LIH+SFL G ++++ + E + +LV+ + +HDNA P
Sbjct: 525 SAAGLIHYSFLNPGETITSE----KYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPH 580
Query: 294 XXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
+ LPHP YSP+L +Y + L++F GK+
Sbjct: 581 VAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKR 625
Score = 29.9 bits (64), Expect = 9.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 74 RWQRCIDSMGAYFD 33
RWQ+C+D G+YFD
Sbjct: 658 RWQKCVDCNGSYFD 671
>DQ341316-1|ABC72087.1| 344|Homo sapiens SETMAR protein.
Length = 344
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = -1
Query: 462 SSACLIHHSFLPNGTGVSTDV*L*RTGYNDGEARESPASFD*SLVS----V*MHDNAGPX 295
S+A LIH+SFL G ++++ + E + +LV+ + +HDNA P
Sbjct: 198 SAAGLIHYSFLNPGETITSE----KYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPH 253
Query: 294 XXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
+ LPHP YSP+L +Y + L++F GK+
Sbjct: 254 VAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKR 298
Score = 29.9 bits (64), Expect = 9.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 74 RWQRCIDSMGAYFD 33
RWQ+C+D G+YFD
Sbjct: 331 RWQKCVDCNGSYFD 344
>BC008931-1|AAH08931.2| 429|Homo sapiens SETMAR protein protein.
Length = 429
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = -1
Query: 462 SSACLIHHSFLPNGTGVSTDV*L*RTGYNDGEARESPASFD*SLVS----V*MHDNAGPX 295
S+A LIH+SFL G ++++ + E + +LV+ + +HDNA P
Sbjct: 283 SAAGLIHYSFLNPGETITSE----KYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPH 338
Query: 294 XXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
+ LPHP YSP+L +Y + L++F GK+
Sbjct: 339 VAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKR 383
Score = 29.9 bits (64), Expect = 9.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 74 RWQRCIDSMGAYFD 33
RWQ+C+D G+YFD
Sbjct: 416 RWQKCVDCNGSYFD 429
>AY952295-1|AAY29570.1| 671|Homo sapiens metnase protein.
Length = 671
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = -1
Query: 462 SSACLIHHSFLPNGTGVSTDV*L*RTGYNDGEARESPASFD*SLVS----V*MHDNAGPX 295
S+A LIH+SFL G ++++ + E + +LV+ + +HDNA P
Sbjct: 525 SAAGLIHYSFLNPGETITSE----KYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPH 580
Query: 294 XXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
+ LPHP YSP+L +Y + L++F GK+
Sbjct: 581 VAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKR 625
Score = 29.9 bits (64), Expect = 9.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 74 RWQRCIDSMGAYFD 33
RWQ+C+D G+YFD
Sbjct: 658 RWQKCVDCNGSYFD 671
>AK222734-1|BAD96454.1| 671|Homo sapiens SET domain and mariner
transposase fusion gene variant protein.
Length = 671
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = -1
Query: 462 SSACLIHHSFLPNGTGVSTDV*L*RTGYNDGEARESPASFD*SLVS----V*MHDNAGPX 295
S+A LIH+SFL G ++++ + E + +LV+ + +HDNA P
Sbjct: 525 SAAGLIHYSFLNPGETITSE----KYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPH 580
Query: 294 XXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
+ LPHP YSP+L +Y + L++F GK+
Sbjct: 581 VAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKR 625
Score = 29.9 bits (64), Expect = 9.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 74 RWQRCIDSMGAYFD 33
RWQ+C+D G+YFD
Sbjct: 658 RWQKCVDCNGSYFD 671
>AF054989-1|AAC09350.1| 671|Homo sapiens unknown protein.
Length = 671
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = -1
Query: 462 SSACLIHHSFLPNGTGVSTDV*L*RTGYNDGEARESPASFD*SLVS----V*MHDNAGPX 295
S+A LIH+SFL G ++++ + E + +LV+ + +HDNA P
Sbjct: 525 SAAGLIHYSFLNPGETITSE----KYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPH 580
Query: 294 XXXXXXXXXXXXXLKDLPHPLYSPNLTLIHY*FLQSLDDFFTGKK 160
+ LPHP YSP+L +Y + L++F GK+
Sbjct: 581 VAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKR 625
Score = 29.9 bits (64), Expect = 9.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 74 RWQRCIDSMGAYFD 33
RWQ+C+D G+YFD
Sbjct: 658 RWQKCVDCNGSYFD 671
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,394,382
Number of Sequences: 237096
Number of extensions: 1639225
Number of successful extensions: 2501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2487
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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